Examples with VCellSortTableModel cbit.vcell.client.desktop.biomodel.VCellSortTableModel used on opensource projects

Example 6 with VCellSortTableModel

use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.

the class ScopedExpressionTableCellRenderer method getTableCellRendererComponent.

/**
 *  This method is sent to the renderer by the drawing table to
 *  configure the renderer appropriately before drawing.  Return
 *  the Component used for drawing.
 *
 * @param	table		the JTable that is asking the renderer to draw.
 *				This parameter can be null.
 * @param	value		the value of the cell to be rendered.  It is
 *				up to the specific renderer to interpret
 *				and draw the value.  eg. if value is the
 *				String "true", it could be rendered as a
 *				string or it could be rendered as a check
 *				box that is checked.  null is a valid value.
 * @param	isSelected	true is the cell is to be renderer with
 *				selection highlighting
 * @param	row	        the row index of the cell being drawn.  When
 *				drawing the header the rowIndex is -1.
 * @param	column	        the column index of the cell being drawn
 */
public java.awt.Component getTableCellRendererComponent(javax.swing.JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
    try {
        TableModel tableModel = table.getModel();
        if (value == null) {
            templateJLabel.setIcon(null);
            templateJLabel.setText(null);
            templateJLabel.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            if (tableModel instanceof VCellSortTableModel) {
                if (row < ((VCellSortTableModel<?>) tableModel).getRowCount()) {
                    Object rowObject = ((VCellSortTableModel<?>) tableModel).getValueAt(row);
                    if (rowObject instanceof SpeciesContextSpecParameter) {
                        templateJLabel.setText(((SpeciesContextSpecParameter) rowObject).getNullExpressionDescription());
                    }
                }
            }
            return templateJLabel;
        }
        if (!(value instanceof ScopedExpression)) {
            return stringRenderer.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
        }
        imageRenderer.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
        JLabel renderer = imageRenderer;
        ScopedExpression scopedExpression = (ScopedExpression) value;
        String scopedExpressInfix = scopedExpression.infix();
        ReusableExpressionIcon rei = scopedExpressionImageIconHash.get(scopedExpressInfix);
        if (rei != null && rei.background.equals(imageRenderer.getBackground()) && rei.foreground.equals(imageRenderer.getForeground())) {
            // Re-use existing ImageIcon is it exists and is same state
            imageRenderer.setIcon(rei.imageIcon);
        } else {
            // Create new ImageIcon
            try {
                ExpressionPrintFormatter epf = new ExpressionPrintFormatter(scopedExpression.getRenamedExpression());
                // 
                // Use graphicsContextProvider BufferedImage to get started because
                // theTable may have a null GC and epf needs a non-null GC
                // 
                java.awt.Graphics2D tempG2D = (java.awt.Graphics2D) graphicsContextProvider.getGraphics();
                // Must set here before epf.getSize is called
                tempG2D.setFont(italicFont);
                // Determine how big the expression image will be
                java.awt.Dimension dim = epf.getSize(tempG2D);
                // Create and render the expression image
                java.awt.image.BufferedImage bi = new java.awt.image.BufferedImage(dim.width, dim.height, java.awt.image.BufferedImage.TYPE_INT_RGB);
                java.awt.Graphics2D g2d = bi.createGraphics();
                // epf.paint needs a non-null clipBounds
                g2d.setClip(0, 0, dim.width, dim.height);
                // set the SAME font used in epf.getSize
                g2d.setFont(italicFont);
                if (table != null && imageRenderer != null) {
                    g2d.setBackground(imageRenderer.getBackground());
                    g2d.setColor(imageRenderer.getForeground());
                }
                // paint background
                g2d.clearRect(0, 0, dim.width, dim.height);
                // paint expression into image
                epf.paint(g2d);
                // Limit cacheing in case a large number of DIFFERENT expressions are being serviced by this TableCellRenderer.
                if ((scopedExpressionCacheSize + (dim.width * dim.height)) >= CACHE_SIZE_LIMIT) {
                    scopedExpressionImageIconHash.clear();
                    scopedExpressionCacheSize = 0;
                }
                javax.swing.ImageIcon newImageIcon = new javax.swing.ImageIcon(bi);
                rei = new ReusableExpressionIcon(newImageIcon, imageRenderer.getBackground(), imageRenderer.getForeground());
                if (scopedExpressionImageIconHash.put(scopedExpressInfix, rei) == null) {
                    scopedExpressionCacheSize += dim.width * dim.height;
                }
                imageRenderer.setIcon(newImageIcon);
            } catch (Exception e) {
                // Fallback to String
                e.printStackTrace();
                templateJLabel.setText(scopedExpression.infix());
                renderer = templateJLabel;
            }
        }
        ExpressionBindingException expressionBindingException = scopedExpression.getExpressionBindingException();
        if (expressionBindingException != null) {
            renderer.setBorder(BorderFactory.createLineBorder(Color.red));
            renderer.setToolTipText(expressionBindingException.getMessage());
        } else {
            renderer.setBorder(BorderFactory.createEmptyBorder());
            renderer.setToolTipText(null);
        }
        if (tableModel instanceof VCellSortTableModel) {
            List<Issue> issueList = ((VCellSortTableModel<?>) tableModel).getIssues(row, column, Issue.SEVERITY_ERROR);
            if (issueList.size() > 0) {
                renderer.setToolTipText(Issue.getHtmlIssueMessage(issueList));
                if (column == 0) {
                    renderer.setBorder(new MatteBorder(1, 1, 1, 0, Color.red));
                } else if (column == table.getColumnCount() - 1) {
                    renderer.setBorder(new MatteBorder(1, 0, 1, 1, Color.red));
                } else {
                    renderer.setBorder(new MatteBorder(1, 0, 1, 0, Color.red));
                }
            } else {
                renderer.setBorder(BORDER);
            }
        }
        return renderer;
    } catch (Exception e) {
        e.printStackTrace();
        templateJLabel.setText("ScopedExpressionTableCellRenderer Error - " + e.getMessage() + " " + value);
        return templateJLabel;
    }
}

Example 7 with VCellSortTableModel

use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.

the class ViewJobsPanel method initialize.

private void initialize() {
    try {
        setName("ViewSimulationJobsPanel");
        getRefreshAllButton().addActionListener(eventHandler);
        // ----------------------------------------------------------------------------------
        // filters, buttons
        JPanel top = new JPanel();
        // table with results
        JPanel bottom = new JPanel();
        Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
        Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
        TitledBorder titleTop = BorderFactory.createTitledBorder(loweredEtchedBorder, " Query Filters ");
        titleTop.setTitleJustification(TitledBorder.LEFT);
        titleTop.setTitlePosition(TitledBorder.TOP);
        TitledBorder titleBottom = BorderFactory.createTitledBorder(loweredEtchedBorder, " Query Results ");
        titleBottom.setTitleJustification(TitledBorder.LEFT);
        titleBottom.setTitlePosition(TitledBorder.TOP);
        top.setBorder(titleTop);
        bottom.setBorder(titleBottom);
        setLayout(new GridBagLayout());
        GridBagConstraints gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        // top, left, bottom, right
        gbc.insets = new Insets(5, 2, 2, 3);
        add(top, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(5, 2, 2, 3);
        add(bottom, gbc);
        // --------------------------------------- top panel (filters, button) --------------
        // filters
        JPanel left = new JPanel();
        JPanel center = new SeparatedJPanel();
        // buttons
        JPanel right = new SeparatedJPanel();
        top.setLayout(new GridBagLayout());
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 2, 2, 3);
        top.add(left, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(5, 2, 2, 3);
        top.add(center, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 2;
        gbc.gridy = 0;
        gbc.weightx = 0.0;
        gbc.weighty = 0.0;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(5, 2, 2, 3);
        top.add(right, gbc);
        // ------------------------------------ left panel (of top panel) -------------
        left.setLayout(new GridBagLayout());
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 2, 2, 0);
        left.add(getWaitingButton(), gbc);
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 3);
        JLabel label = new JLabel(waitingIcon);
        left.add(label, gbc);
        gbc.gridx = 2;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 15, 2, 0);
        left.add(getQueuedButton(), gbc);
        gbc.gridx = 3;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 10);
        label = new JLabel(queuedIcon);
        left.add(label, gbc);
        // -------------------------------------
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 2, 2, 0);
        left.add(getDispatchedButton(), gbc);
        gbc.gridx = 1;
        gbc.gridy = 1;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 3);
        label = new JLabel(dispatchedIcon);
        left.add(label, gbc);
        gbc.gridx = 2;
        gbc.gridy = 1;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 15, 2, 0);
        left.add(getRunningButton(), gbc);
        gbc.gridx = 3;
        gbc.gridy = 1;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 10);
        label = new JLabel(runningIcon);
        left.add(label, gbc);
        // -------------------------------------
        gbc.gridx = 0;
        gbc.gridy = 2;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 2, 2, 0);
        left.add(getCompletedButton(), gbc);
        gbc.gridx = 1;
        gbc.gridy = 2;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 3);
        label = new JLabel(completedIcon);
        left.add(label, gbc);
        gbc.gridx = 2;
        gbc.gridy = 2;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 15, 2, 3);
        left.add(getFailedButton(), gbc);
        gbc.gridx = 3;
        gbc.gridy = 2;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 10);
        label = new JLabel(failedIcon);
        left.add(label, gbc);
        // -------------------------------------
        gbc.gridx = 0;
        gbc.gridy = 3;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 2, 2, 0);
        left.add(getStoppedButton(), gbc);
        gbc.gridx = 1;
        gbc.gridy = 3;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 0, 2, 3);
        label = new JLabel(stoppedIcon);
        left.add(label, gbc);
        // ---------------------------------------- center panel (of top panel) ------------
        center.setLayout(new GridBagLayout());
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.insets = new Insets(4, 15, 4, 4);
        center.add(new JLabel("Max # of results "), gbc);
        textFieldJobsLimit = new JTextField();
        textFieldJobsLimit.addActionListener(eventHandler);
        // textFieldJobsLimit.getDocument().addDocumentListener(eventHandler);
        textFieldJobsLimit.setText(maxRows + "");
        Dimension d = textFieldJobsLimit.getPreferredSize();
        d.width = 80;
        textFieldJobsLimit.setPreferredSize(d);
        textFieldJobsLimit.setMaximumSize(d);
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.insets = new Insets(4, 0, 4, 4);
        center.add(textFieldJobsLimit, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 2;
        gbc.gridy = 0;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(5, 15, 2, 3);
        center.add(getOrphanedButton(), gbc);
        // gbc = new GridBagConstraints();
        // gbc.weighty = 1.0;
        // gbc.gridx = 0;
        // gbc.gridy = 2;
        // //			gbc.gridheight = GridBagConstraints.REMAINDER;
        // gbc.anchor = GridBagConstraints.WEST;
        // gbc.fill = java.awt.GridBagConstraints.VERTICAL;
        // gbc.insets = new Insets(4,4,4,4);
        // center.add(new JLabel("---"), gbc);			// fake vertical
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 2;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.WEST;
        gbc.fill = java.awt.GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 11, 4, 4);
        center.add(getSubmitDatePanel(), gbc);
        gbc = new GridBagConstraints();
        gbc.weightx = 1.0;
        gbc.gridx = 3;
        gbc.gridy = 2;
        gbc.anchor = GridBagConstraints.EAST;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 4, 4, 4);
        // fake horizontal
        center.add(new JLabel("-"), gbc);
        // ---------------------------------------- right panel (of top panel) -------------
        right.setLayout(new GridBagLayout());
        gbc = new GridBagConstraints();
        gbc.weighty = 1.0;
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.anchor = GridBagConstraints.WEST;
        gbc.fill = java.awt.GridBagConstraints.VERTICAL;
        // fake vertical
        right.add(new JLabel(""), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.weightx = 0;
        gbc.weighty = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 12, 4, 8);
        right.add(getRefreshAllButton(), gbc);
        getCompletedButton().setSelected(false);
        getDispatchedButton().setSelected(true);
        getFailedButton().setSelected(true);
        getQueuedButton().setSelected(true);
        getRunningButton().setSelected(true);
        getStoppedButton().setSelected(true);
        getWaitingButton().setSelected(true);
        getOrphanedButton().setSelected(false);
        getSubmitBetweenButton().setSelected(false);
        // ----------------------------------------- bottom panel (the table) -------------------
        table = new EditorScrollTable();
        model = new SimulationJobsTableModel(table, this);
        table.setModel(model);
        table.getSelectionModel().addListSelectionListener(eventHandler);
        table.getModel().addTableModelListener(eventHandler);
        table.addMouseMotionListener(new // add toolTipText for each table cell
        MouseMotionAdapter() {

            public void mouseMoved(MouseEvent e) {
                Point p = e.getPoint();
                int row = table.rowAtPoint(p);
                int column = table.columnAtPoint(p);
                table.setToolTipText(String.valueOf(table.getValueAt(row, column)));
            }
        });
        bottom.setLayout(new GridBagLayout());
        int gridy = 0;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.gridwidth = 8;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        // table.setPreferredScrollableViewportSize(new Dimension(700,350));	// apparently useless
        bottom.add(table.getEnclosingScrollPane(), gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.insets = new Insets(4, 4, 4, 4);
        bottom.add(new JLabel("Search "), gbc);
        textFieldSearch = new JTextField(70);
        textFieldSearch.addActionListener(eventHandler);
        textFieldSearch.getDocument().addDocumentListener(eventHandler);
        textFieldSearch.putClientProperty("JTextField.variant", "search");
        gbc = new java.awt.GridBagConstraints();
        gbc.weightx = 1.0;
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 0, 4, 4);
        bottom.add(textFieldSearch, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 4;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 4, 4, 10);
        bottom.add(countLabel, gbc);
        // renderer for the status icon; the tooltip gives the text
        DefaultScrollTableCellRenderer statusCellRenderer = new DefaultScrollTableCellRenderer() {

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setText((String) value);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == model) {
                        selectedObject = model.getValueAt(row);
                    }
                    if (selectedObject != null && selectedObject instanceof SimpleJobStatus) {
                        SimpleJobStatus js = (SimpleJobStatus) selectedObject;
                        SchedulerStatus ss1 = js.jobStatus.getSchedulerStatus();
                        switch(ss1) {
                            case WAITING:
                                setIcon(waitingIcon);
                                break;
                            case QUEUED:
                                setIcon(queuedIcon);
                                break;
                            case DISPATCHED:
                                setIcon(dispatchedIcon);
                                break;
                            case RUNNING:
                                setIcon(runningIcon);
                                break;
                            case COMPLETED:
                                setIcon(completedIcon);
                                break;
                            case STOPPED:
                                setIcon(stoppedIcon);
                                break;
                            case FAILED:
                                setIcon(failedIcon);
                                break;
                            default:
                                setIcon(failedIcon);
                                break;
                        }
                        // setText("");
                        setToolTipText(ss1.getDescription());
                        setHorizontalTextPosition(SwingConstants.RIGHT);
                    }
                }
                return this;
            }
        };
        // statusCellRenderer.setHorizontalAlignment(JLabel.RIGHT);
        DefaultScrollTableCellRenderer dateTimeCellRenderer = new DefaultScrollTableCellRenderer() {

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setText((String) value);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == model) {
                        selectedObject = model.getValueAt(row);
                    }
                    if (selectedObject != null && selectedObject instanceof SimpleJobStatus) {
                        SimpleJobStatus sjs = (SimpleJobStatus) selectedObject;
                        DateFormat df = new SimpleDateFormat("MM.dd.yyyy HH:MM:SS");
                        Date date = sjs.jobStatus.getStartDate();
                        String str = df.format(date);
                        setToolTipText(str);
                    }
                }
                return this;
            }
        };
        DefaultScrollTableCellRenderer hasDataCellRenderer = new DefaultScrollTableCellRenderer() {

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setText((String) value);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == model) {
                        selectedObject = model.getValueAt(row);
                    }
                    if (selectedObject != null && selectedObject instanceof SimpleJobStatus) {
                        SimpleJobStatus sjs = (SimpleJobStatus) selectedObject;
                        if (sjs.jobStatus.hasData()) {
                            setIcon(dataYesIcon);
                        } else {
                            setIcon(dataNoIcon);
                        }
                    }
                }
                return this;
            }
        };
        table.getColumnModel().getColumn(SimulationJobsTableModel.iColStatus).setCellRenderer(statusCellRenderer);
        table.getColumnModel().getColumn(SimulationJobsTableModel.iColSubmitDate).setCellRenderer(dateTimeCellRenderer);
        table.getColumnModel().getColumn(SimulationJobsTableModel.iColHasData).setCellRenderer(hasDataCellRenderer);
        // table.getColumnModel().getColumn(SimulationJobsTableModel.iColDepiction).setMinWidth(400);
        // table.getColumnModel().getColumn(SimulationJobsTableModel.iColStatus).setPreferredWidth(30);
        // table.getColumnModel().getColumn(SimulationJobsTableModel.iColStatus).setMaxWidth(30);
        table.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
        refreshInterface();
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 8 with VCellSortTableModel

use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.

the class InitialConditionsPanel method initialize.

/**
 * Initialize the class.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initialize() {
    try {
        // user code begin {1}
        // user code end
        setName("InitialConditionsPanel");
        setLayout(new BorderLayout());
        add(getRadioButtonAndCheckboxPanel(), BorderLayout.NORTH);
        add(getScrollPaneTable().getEnclosingScrollPane(), BorderLayout.CENTER);
        getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
        getJMenuItemPaste().addActionListener(ivjEventHandler);
        getJMenuItemCopy().addActionListener(ivjEventHandler);
        getJMenuItemCopyAll().addActionListener(ivjEventHandler);
        getJMenuItemPasteAll().addActionListener(ivjEventHandler);
        getAmountRadioButton().addActionListener(ivjEventHandler);
        getConcentrationRadioButton().addActionListener(ivjEventHandler);
        getRandomizeInitCondnCheckbox().addActionListener(ivjEventHandler);
        DefaultTableCellRenderer renderer = new DefaultScrollTableCellRenderer() {

            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                setIcon(null);
                defaultToolTipText = null;
                if (value instanceof Species) {
                    setText(((Species) value).getCommonName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof SpeciesContext) {
                    setText(((SpeciesContext) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof Structure) {
                    setText(((Structure) value).getName());
                    defaultToolTipText = getText();
                    setToolTipText(defaultToolTipText);
                } else if (value instanceof ScopedExpression) {
                    SpeciesContextSpec scSpec = tableModel.getValueAt(row);
                    VCUnitDefinition unit = null;
                    if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_INITIAL.label)) {
                        SpeciesContextSpecParameter initialConditionParameter = scSpec.getInitialConditionParameter();
                        unit = initialConditionParameter.getUnitDefinition();
                    } else if (table.getColumnName(column).equals(SpeciesContextSpecsTableModel.ColumnType.COLUMN_DIFFUSION.label)) {
                        SpeciesContextSpecParameter diffusionParameter = scSpec.getDiffusionParameter();
                        unit = diffusionParameter.getUnitDefinition();
                    }
                    if (unit != null) {
                        setHorizontalTextPosition(JLabel.LEFT);
                        setIcon(new TextIcon("[" + unit.getSymbolUnicode() + "]", DefaultScrollTableCellRenderer.uneditableForeground));
                    }
                    int rgb = 0x00ffffff & DefaultScrollTableCellRenderer.uneditableForeground.getRGB();
                    defaultToolTipText = "<html>" + StringEscapeUtils.escapeHtml4(getText()) + " <font color=#" + Integer.toHexString(rgb) + "> [" + unit.getSymbolUnicode() + "] </font></html>";
                    setToolTipText(defaultToolTipText);
                    if (unit != null) {
                        setText(defaultToolTipText);
                    }
                }
                TableModel tableModel = table.getModel();
                if (tableModel instanceof SortTableModel) {
                    DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
                    setHorizontalTextPosition(JLabel.TRAILING);
                }
                return this;
            }
        };
        DefaultTableCellRenderer rbmSpeciesShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof SpeciesContextSpec) {
                            SpeciesContextSpec scs = (SpeciesContextSpec) selectedObject;
                            SpeciesContext sc = scs.getSpeciesContext();
                            // sp may be null for "plain" species contexts
                            SpeciesPattern sp = sc.getSpeciesPattern();
                            Graphics panelContext = table.getGraphics();
                            spss = new SpeciesPatternSmallShape(4, 2, sp, shapeManager, panelContext, sc, isSelected, issueManager);
                        }
                    } else {
                        spss = null;
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                if (spss != null) {
                    spss.paintSelf(g);
                }
            }
        };
        getScrollPaneTable().setDefaultRenderer(SpeciesContext.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Structure.class, renderer);
        getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmSpeciesShapeDepictionCellRenderer);
        getScrollPaneTable().setDefaultRenderer(Species.class, renderer);
        getScrollPaneTable().setDefaultRenderer(ScopedExpression.class, renderer);
        getScrollPaneTable().setDefaultRenderer(Boolean.class, new ScrollTableBooleanCellRenderer());
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 9 with VCellSortTableModel

use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.

the class ModelProcessSpecsPanel method initConnections.

/**
 * Initializes connections
 * @exception java.lang.Exception The exception description.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initConnections() throws java.lang.Exception {
    // user code begin {1}
    // user code end
    this.addPropertyChangeListener(ivjEventHandler);
    getScrollPaneTable().setModel(getModelProcessSpecsTableModel());
    getScrollPaneTable().setDefaultRenderer(ModelProcess.class, new DefaultScrollTableCellRenderer() {

        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            defaultToolTipText = null;
            if (value instanceof ModelProcess) {
                setText(((ModelProcess) value).getName());
                defaultToolTipText = getText();
                setToolTipText(defaultToolTipText);
            }
            TableModel tableModel = table.getModel();
            if (tableModel instanceof SortTableModel) {
                DefaultScrollTableCellRenderer.issueRenderer(this, defaultToolTipText, table, row, column, (SortTableModel) tableModel);
            }
            return this;
        }
    });
    DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

        List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();

        SpeciesPatternSmallShape spss = null;

        @Override
        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            if (table.getModel() instanceof VCellSortTableModel<?>) {
                Object selectedObject = null;
                if (table.getModel() == ivjModelProcessSpecsTableModel) {
                    selectedObject = ivjModelProcessSpecsTableModel.getValueAt(row);
                }
                if (selectedObject != null) {
                    if (selectedObject instanceof ModelProcessSpec) {
                        ModelProcessSpec mps = (ModelProcessSpec) selectedObject;
                        ModelProcess mp = (ModelProcess) mps.getModelProcess();
                        if (mp instanceof ReactionRule) {
                            ReactionRule rr = (ReactionRule) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            List<ReactantPattern> rpList = rr.getReactantPatterns();
                            int xPos = 4;
                            for (int i = 0; i < rpList.size(); i++) {
                                SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < rpList.size() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rr.isReversible()) {
                                        spss.addEndText("<->");
                                        xPos += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                            List<ProductPattern> ppList = rr.getProductPatterns();
                            xPos += 7;
                            for (int i = 0; i < ppList.size(); i++) {
                                SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rr, isSelected, issueManager);
                                if (i < ppList.size() - 1) {
                                    spss.addEndText("+");
                                }
                                xPos += spss.getWidth() + 15;
                                spssList.add(spss);
                            }
                        } else {
                            ReactionStep rs = (ReactionStep) mp;
                            Graphics panelContext = table.getGraphics();
                            spssList.clear();
                            int xPos = 4;
                            int extraSpace = 0;
                            for (int i = 0; i < rs.getNumReactants(); i++) {
                                SpeciesPattern sp = rs.getReactant(i).getSpeciesContext().getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i < rs.getNumReactants() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rs.isReversible()) {
                                        spss.addEndText("<->");
                                        extraSpace += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                int offset = sp == null ? 17 : 15;
                                offset += extraSpace;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                            xPos += 8;
                            for (int i = 0; i < rs.getNumProducts(); i++) {
                                SpeciesPattern sp = rs.getProduct(i).getSpeciesContext().getSpeciesPattern();
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    xPos += 14;
                                }
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, shapeManager, panelContext, rs, isSelected, issueManager);
                                if (i == 0 && rs.getNumReactants() == 0) {
                                    spss.addStartText("->");
                                }
                                if (i < rs.getNumProducts() - 1) {
                                    spss.addEndText("+");
                                }
                                int offset = sp == null ? 17 : 15;
                                int w = spss.getWidth();
                                xPos += w + offset;
                                spssList.add(spss);
                            }
                        }
                    }
                } else {
                    spssList.clear();
                }
            }
            setText("");
            return this;
        }

        @Override
        public void paintComponent(Graphics g) {
            super.paintComponent(g);
            for (SpeciesPatternSmallShape spss : spssList) {
                if (spss == null) {
                    continue;
                }
                spss.paintSelf(g);
            }
        }
    };
    getScrollPaneTable().setDefaultRenderer(SpeciesPattern.class, rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
    // ivjScrollPaneTable.getColumnModel().getColumn(ModelProcessSpecsTableModel.ColumnType.COLUMN_DEPICTION.ordinal()).setPreferredWidth(180);
    getScrollPaneTable().getSelectionModel().addListSelectionListener(ivjEventHandler);
}

Example 10 with VCellSortTableModel

use of cbit.vcell.client.desktop.biomodel.VCellSortTableModel in project vcell by virtualcell.

the class ViewGeneratedReactionsPanel method initialize.

private void initialize() {
    try {
        setName("ViewGeneratedReactionsPanel");
        setLayout(new GridBagLayout());
        shapePanel = new RulesShapePanel() {

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                for (AbstractComponentShape stls : reactantPatternShapeList) {
                    stls.paintSelf(g);
                }
                for (AbstractComponentShape stls : productPatternShapeList) {
                    stls.paintSelf(g);
                }
            }
        };
        Border loweredEtchedBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
        Border loweredBevelBorder = BorderFactory.createLoweredBevelBorder();
        shapePanel.setLayout(new GridBagLayout());
        shapePanel.setBackground(Color.white);
        // don't show the brown contour even though it's not editable
        shapePanel.setEditable(true);
        shapePanel.setShowMoleculeColor(true);
        shapePanel.setShowNonTrivialOnly(true);
        JScrollPane scrollPane = new JScrollPane(shapePanel);
        scrollPane.setBorder(loweredBevelBorder);
        scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
        scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
        JPanel optionsPanel = new JPanel();
        optionsPanel.setLayout(new GridBagLayout());
        getZoomSmallerButton().setEnabled(true);
        getZoomLargerButton().setEnabled(false);
        GridBagConstraints gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.insets = new Insets(0, 0, 0, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanel.add(getZoomLargerButton(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.insets = new Insets(2, 0, 4, 10);
        gbc.anchor = GridBagConstraints.WEST;
        optionsPanel.add(getZoomSmallerButton(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 2;
        gbc.weightx = 1;
        // fake cell used for filling all the vertical empty space
        gbc.weighty = 1;
        gbc.anchor = GridBagConstraints.WEST;
        gbc.insets = new Insets(4, 4, 4, 10);
        optionsPanel.add(new JLabel(""), gbc);
        JPanel containerOfScrollPanel = new JPanel();
        containerOfScrollPanel.setLayout(new BorderLayout());
        containerOfScrollPanel.add(optionsPanel, BorderLayout.WEST);
        containerOfScrollPanel.add(scrollPane, BorderLayout.CENTER);
        Dimension dim = new Dimension(500, 140);
        // dimension of shape panel
        containerOfScrollPanel.setPreferredSize(dim);
        containerOfScrollPanel.setMinimumSize(dim);
        containerOfScrollPanel.setMaximumSize(dim);
        // -----------------------------------------------------------------------------
        table = new EditorScrollTable();
        tableModel = new GeneratedReactionTableModel(table, owner);
        table.setModel(tableModel);
        table.getSelectionModel().addListSelectionListener(eventHandler);
        table.getModel().addTableModelListener(eventHandler);
        DefaultTableCellRenderer rightRenderer = new DefaultTableCellRenderer();
        rightRenderer.setHorizontalAlignment(JLabel.RIGHT);
        // table.getColumnModel().getColumn(GeneratedReactionTableModel.iColIndex).setCellRenderer(rightRenderer);	// right align first table column
        // table.getColumnModel().getColumn(GeneratedReactionTableModel.iColIndex).setMaxWidth(60);				// left column wide enough for 6-7 digits
        int gridy = 0;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.gridwidth = 8;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        // table.setPreferredScrollableViewportSize(new Dimension(400,200));
        add(table.getEnclosingScrollPane(), gbc);
        // add toolTipText for each table cell
        table.addMouseMotionListener(new MouseMotionAdapter() {

            public void mouseMoved(MouseEvent e) {
                Point p = e.getPoint();
                int row = table.rowAtPoint(p);
                int column = table.columnAtPoint(p);
                table.setToolTipText(String.valueOf(table.getValueAt(row, column)));
            }
        });
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.insets = new Insets(4, 4, 4, 4);
        add(new JLabel("Search "), gbc);
        textFieldSearch = new JTextField(70);
        textFieldSearch.addActionListener(eventHandler);
        textFieldSearch.getDocument().addDocumentListener(eventHandler);
        textFieldSearch.putClientProperty("JTextField.variant", "search");
        gbc = new GridBagConstraints();
        gbc.weightx = 1.0;
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 0, 4, 4);
        add(textFieldSearch, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 4;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.insets = new Insets(4, 4, 4, 10);
        add(totalReactionsLabel, gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        // gbc.weightx = 1.0;
        // gbc.weighty = 1.0;
        gbc.gridwidth = 8;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.fill = java.awt.GridBagConstraints.BOTH;
        gbc.insets = new Insets(4, 4, 4, 4);
        add(containerOfScrollPanel, gbc);
        // rendering the small shapes of a fake rule in the Depiction column of this viewer table)
        // TODO: this renderer is almost identical with the one in BioModelEditorModelPanel (which paints the small shapes
        // of a rule in the Depiction column of the reaction table)
        DefaultScrollTableCellRenderer rbmReactionShapeDepictionCellRenderer = new DefaultScrollTableCellRenderer() {

            List<SpeciesPatternSmallShape> spssList = new ArrayList<SpeciesPatternSmallShape>();

            SpeciesPatternSmallShape spss = null;

            @Override
            public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
                super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
                if (table.getModel() instanceof VCellSortTableModel<?>) {
                    Object selectedObject = null;
                    if (table.getModel() == tableModel) {
                        selectedObject = tableModel.getValueAt(row);
                    }
                    if (selectedObject != null) {
                        if (selectedObject instanceof GeneratedReactionTableRow) {
                            ReactionRule rr = ((GeneratedReactionTableRow) selectedObject).getReactionRule();
                            Graphics panelContext = table.getGraphics();
                            BioModel bioModel = owner.getSimulationContext().getBioModel();
                            spssList.clear();
                            List<ReactantPattern> rpList = rr.getReactantPatterns();
                            int xPos = 4;
                            for (int i = 0; i < rpList.size(); i++) {
                                SpeciesPattern sp = rr.getReactantPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, null, panelContext, rr, isSelected, issueManager);
                                if (i < rpList.size() - 1) {
                                    spss.addEndText("+");
                                } else {
                                    if (rr.isReversible()) {
                                        spss.addEndText("<->");
                                        xPos += 7;
                                    } else {
                                        spss.addEndText("->");
                                    }
                                }
                                xPos += spss.getWidth() + 14;
                                spssList.add(spss);
                            }
                            List<ProductPattern> ppList = rr.getProductPatterns();
                            xPos += 7;
                            for (int i = 0; i < ppList.size(); i++) {
                                SpeciesPattern sp = rr.getProductPattern(i).getSpeciesPattern();
                                spss = new SpeciesPatternSmallShape(xPos, 2, sp, null, panelContext, rr, isSelected, issueManager);
                                if (i < ppList.size() - 1) {
                                    spss.addEndText("+");
                                }
                                xPos += spss.getWidth() + 14;
                                spssList.add(spss);
                            }
                        }
                    } else {
                        spssList.clear();
                    }
                }
                setText("");
                return this;
            }

            @Override
            public void paintComponent(Graphics g) {
                super.paintComponent(g);
                for (SpeciesPatternSmallShape spss : spssList) {
                    if (spss == null) {
                        continue;
                    }
                    spss.paintSelf(g);
                }
            }
        };
        table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setCellRenderer(rbmReactionShapeDepictionCellRenderer);
        table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setPreferredWidth(400);
        table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDepiction).setMinWidth(400);
        table.getColumnModel().getColumn(GeneratedReactionTableModel.iColDefinition).setPreferredWidth(30);
        table.setAutoResizeMode(JTable.AUTO_RESIZE_LAST_COLUMN);
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}