Examples with User org.vcell.util.document.User used on opensource projects

Example 76 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class DataJobEvent method fromJsonRep.

public static DataJobEvent fromJsonRep(Object eventSource, DataJobEventRepresentation eventRep) {
    Double progress = eventRep.progress;
    User owner = new User(eventRep.username, new KeyValue(eventRep.userkey));
    VCDataJobID dataJobID = new VCDataJobID(eventRep.jobid, owner, eventRep.isBackgroundTask);
    int eventType = eventRep.eventType;
    KeyValue dataKey = new KeyValue(eventRep.dataKey);
    String dataIdString = eventRep.dataIdString;
    DataJobEvent dataJobEvent = new DataJobEvent(dataJobID, eventType, dataKey, dataIdString, progress);
    return dataJobEvent;
}

Example 77 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class ExportEvent method fromJsonRep.

public static ExportEvent fromJsonRep(Object eventSource, ExportEventRepresentation rep) {
    User user = new User(rep.username, new KeyValue(rep.userkey));
    TimeSpecs timeSpecs = null;
    if (rep.exportTimeSpecs != null) {
        timeSpecs = TimeSpecs.fromJsonRep(rep.exportTimeSpecs);
    }
    VariableSpecs variableSpecs = null;
    if (rep.exportVariableSpecs != null) {
        variableSpecs = VariableSpecs.fromJsonRep(rep.exportVariableSpecs);
    }
    ExportEvent event = new ExportEvent(eventSource, rep.jobid, user, rep.dataIdString, new KeyValue(rep.dataKey), rep.eventType, rep.format, rep.location, rep.progress, timeSpecs, variableSpecs);
    return event;
}

Example 78 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class SimulationJobStatusEvent method fromJsonRep.

public static SimulationJobStatusEvent fromJsonRep(Object eventSource, SimulationJobStatusEventRepresentation eventRep) {
    String simid = Simulation.createSimulationID(new KeyValue(eventRep.jobStatus.simulationKey));
    int jobIndex = eventRep.jobStatus.jobIndex;
    int taskID = eventRep.jobStatus.taskID;
    VCellServerID serverID = VCellServerID.getServerID(eventRep.jobStatus.vcellServerID);
    KeyValue simkey = new KeyValue(eventRep.jobStatus.simulationKey);
    User owner = new User(eventRep.jobStatus.owner_userid, new KeyValue(eventRep.jobStatus.onwer_userkey));
    VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simkey, owner);
    Date submitDate = eventRep.jobStatus.submitDate;
    SchedulerStatus schedulerStatus = null;
    if (eventRep.jobStatus.schedulerStatus != null) {
        schedulerStatus = SchedulerStatus.valueOf(eventRep.jobStatus.schedulerStatus.name());
    }
    HtcJobID htcJobID = null;
    Long htcJobNumber = eventRep.jobStatus.htcJobNumber;
    SimulationJobStatusRepresentation.BatchSystemType htcBatchSystemType = eventRep.jobStatus.htcBatchSystemType;
    if (htcJobNumber != null) {
        htcJobID = new HtcJobID(htcJobNumber.toString(), BatchSystemType.valueOf(htcBatchSystemType.name()));
    }
    SimulationMessage simMessage = null;
    DetailedState detailedState = DetailedState.valueOf(eventRep.jobStatus.detailedState.name());
    String message = eventRep.jobStatus.detailedStateMessage;
    if (detailedState != null) {
        simMessage = SimulationMessage.create(detailedState, message, htcJobID);
    }
    SimulationQueueEntryStatus simQueueStatus = null;
    Date queueDate = eventRep.jobStatus.queueDate;
    Integer queuePriority = eventRep.jobStatus.queuePriority;
    SimulationJobStatusRepresentation.SimulationQueueID queueId2 = eventRep.jobStatus.queueId;
    if (queueDate != null && queuePriority != null) {
        simQueueStatus = new SimulationQueueEntryStatus(queueDate, queuePriority, SimulationQueueID.valueOf(queueId2.name()));
    }
    SimulationExecutionStatus simExeStatus = null;
    Date startDate = eventRep.jobStatus.simexe_startDate;
    String computeHost = eventRep.jobStatus.computeHost;
    Date latestUpdateDate = eventRep.jobStatus.simexe_latestUpdateDate;
    Date endDate = eventRep.jobStatus.simexe_endDate;
    Boolean hasData = eventRep.jobStatus.hasData;
    if (latestUpdateDate != null) {
        simExeStatus = new SimulationExecutionStatus(startDate, computeHost, latestUpdateDate, endDate, hasData, htcJobID);
    }
    SimulationJobStatus jobStatus = new SimulationJobStatus(serverID, vcSimID, jobIndex, submitDate, schedulerStatus, taskID, simMessage, simQueueStatus, simExeStatus);
    Double progress = eventRep.progress;
    Double timepoint = eventRep.timePoint;
    String username = eventRep.username;
    SimulationJobStatusEvent event = new SimulationJobStatusEvent(eventSource, simid, jobStatus, progress, timepoint, username);
    return event;
}

Example 79 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class DatabaseWindowManager method isOwnerUserEqual.

/**
 * Insert the method's description here.
 * Creation date: (5/14/2004 5:35:55 PM)
 */
public boolean isOwnerUserEqual() {
    User currentUser = getRequestManager().getDocumentManager().getUser();
    User selectedDocOwner = null;
    if (getPanelSelection() != null) {
        selectedDocOwner = getPanelSelection().getVersion().getOwner();
    }
    if (Compare.isEqual(currentUser, selectedDocOwner)) {
        return true;
    } else {
        return false;
    }
}

Example 80 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class TestingFrameworkWindowManager method compare.

/**
 * Insert the method's description here.
 * Creation date: (1/20/2003 11:52:18 AM)
 * @return boolean
 * @param mathDesc cbit.vcell.math.MathDescription
 */
public void compare(final TestCriteriaNew testCriteria, final SimulationInfo userDefinedRegrSimInfo) {
    final String KEY_MERGEDDATAINFO = "KEY_MERGEDDATAINFO";
    final String KEY_MERGEDDATASETVIEWERCNTRLR = "KEY_MERGEDDATASETVIEWERCNTRLR";
    AsynchClientTask gatherDataTask = new AsynchClientTask("Gathering compare Dta...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            // create the merged data for the simulationInfo in testCriteria and the regression simInfo
            SimulationInfo simInfo = testCriteria.getSimInfo();
            SimulationInfo regrSimInfo = null;
            if (userDefinedRegrSimInfo != null) {
                regrSimInfo = userDefinedRegrSimInfo;
            } else {
                regrSimInfo = testCriteria.getRegressionSimInfo();
            }
            if (regrSimInfo == null) {
                return;
            }
            VCDataIdentifier vcSimId1 = new VCSimulationDataIdentifier(simInfo.getAuthoritativeVCSimulationIdentifier(), 0);
            VCDataIdentifier vcSimId2 = new VCSimulationDataIdentifier(regrSimInfo.getAuthoritativeVCSimulationIdentifier(), 0);
            User user = simInfo.getOwner();
            VCDataIdentifier[] vcIdentifierArray = new VCDataIdentifier[] { vcSimId2, vcSimId1 };
            MergedDataInfo mergedDataInfo = new MergedDataInfo(user, vcIdentifierArray, MergedDataInfo.createDefaultPrefixNames(vcIdentifierArray.length));
            hashTable.put(KEY_MERGEDDATAINFO, mergedDataInfo);
            // get the data manager and wire it up
            // 
            // get all "Data1.XXX" data identifiers ... and remove those which are functions
            // add functions of the form DIFF_XXX = (Data1.XXX - Data2.XXX) for convenience in comparing results.
            // 
            Simulation sim1 = ((ClientDocumentManager) getRequestManager().getDocumentManager()).getSimulation(simInfo);
            Simulation sim2 = ((ClientDocumentManager) getRequestManager().getDocumentManager()).getSimulation(regrSimInfo);
            boolean isSpatial = sim1.isSpatial();
            if (sim2.isSpatial() != isSpatial) {
                throw new RuntimeException("Cannot compare spatial and non-spatial data sets : " + simInfo + "& " + regrSimInfo);
            }
            DataManager mergedDataManager = getRequestManager().getDataManager(null, mergedDataInfo, isSpatial);
            DataManager data1Manager = getRequestManager().getDataManager(null, vcSimId1, isSpatial);
            DataManager data2Manager = getRequestManager().getDataManager(null, vcSimId2, isSpatial);
            Vector<AnnotatedFunction> functionList = new Vector<AnnotatedFunction>();
            AnnotatedFunction[] data1Functions = data1Manager.getFunctions();
            AnnotatedFunction[] existingFunctions = mergedDataManager.getFunctions();
            DataIdentifier[] data1Identifiers = data1Manager.getDataIdentifiers();
            DataIdentifier[] data2Identifiers = data2Manager.getDataIdentifiers();
            for (int i = 0; i < data1Identifiers.length; i++) {
                // 
                // make sure dataIdentifier is not already a function
                // 
                boolean bIsFunction = false;
                for (int j = 0; j < data1Functions.length; j++) {
                    if (data1Identifiers[i].getName().equals(data1Functions[j].getName())) {
                        bIsFunction = true;
                    }
                }
                if (bIsFunction) {
                    continue;
                }
                // 
                // make sure corresponding identifier exists in "Data2"
                // 
                boolean bIsInData2 = false;
                for (int j = 0; j < data2Identifiers.length; j++) {
                    if (data2Identifiers[j].getName().equals(data1Identifiers[i].getName())) {
                        bIsInData2 = true;
                    }
                }
                if (!bIsInData2) {
                    continue;
                }
                // 
                // create "Diff" function
                // 
                String data1Name = "Data1." + data1Identifiers[i].getName();
                String data2Name = "Data2." + data1Identifiers[i].getName();
                String functionName = "DIFF_" + data1Identifiers[i].getName();
                VariableType varType = data1Identifiers[i].getVariableType();
                Expression exp = new Expression(data1Name + "-" + data2Name);
                AnnotatedFunction newFunction = new AnnotatedFunction(functionName, exp, data1Identifiers[i].getDomain(), "", varType, FunctionCategory.OUTPUTFUNCTION);
                // 
                // make sure new "Diff" function isn't already in existing function list.
                // 
                boolean bDiffFunctionAlreadyHere = false;
                for (int j = 0; j < existingFunctions.length; j++) {
                    if (newFunction.getName().equals(existingFunctions[j].getName())) {
                        bDiffFunctionAlreadyHere = true;
                    }
                }
                if (bDiffFunctionAlreadyHere) {
                    continue;
                }
                functionList.add(newFunction);
            }
            OutputContext outputContext = null;
            if (functionList.size() > 0) {
                AnnotatedFunction[] newDiffFunctions = (AnnotatedFunction[]) BeanUtils.getArray(functionList, AnnotatedFunction.class);
                outputContext = new OutputContext(newDiffFunctions);
            }
            MergedDatasetViewerController mergedDatasetViewerCtr = getRequestManager().getMergedDatasetViewerController(outputContext, mergedDataInfo, !isSpatial);
            hashTable.put(KEY_MERGEDDATASETVIEWERCNTRLR, mergedDatasetViewerCtr);
        }
    };
    AsynchClientTask showResultsTask = new AsynchClientTask("Showing Compare Results", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            // make the viewer
            MergedDatasetViewerController mergedDatasetViewerCtr = (MergedDatasetViewerController) hashTable.get(KEY_MERGEDDATASETVIEWERCNTRLR);
            addDataListener(mergedDatasetViewerCtr);
            DataViewer viewer = mergedDatasetViewerCtr.createViewer();
            viewer.setDataViewerManager(TestingFrameworkWindowManager.this);
            addExportListener(viewer);
            VCDataIdentifier vcDataIdentifier = (MergedDataInfo) hashTable.get(KEY_MERGEDDATAINFO);
            ChildWindowManager childWindowManager = TFWFinder.findChildWindowManager(getComponent());
            ChildWindow childWindow = childWindowManager.addChildWindow(viewer, vcDataIdentifier, "Comparing ... " + vcDataIdentifier.getID());
            childWindow.pack();
            // childWindow.setSize(450, 450);
            childWindow.setIsCenteredOnParent();
            childWindow.show();
        }
    };
    ClientTaskDispatcher.dispatch(getComponent(), new Hashtable<String, Object>(), new AsynchClientTask[] { gatherDataTask, showResultsTask }, false);
}