Examples with DataViewer cbit.vcell.client.data.DataViewer used on opensource projects

Example 1 with DataViewer

use of cbit.vcell.client.data.DataViewer in project vcell by virtualcell.

the class ClientSimManager method showSimulationResults0.

private AsynchClientTask[] showSimulationResults0(final boolean isLocal, final ViewerType viewerType) {
    // Create the AsynchClientTasks
    ArrayList<AsynchClientTask> taskList = new ArrayList<AsynchClientTask>();
    taskList.add(new AsynchClientTaskFunction(h -> {
        h.put(H_LOCAL_SIM, isLocal);
        h.put(H_VIEWER_TYPE, viewerType);
    }, "setLocal", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING));
    final DocumentWindowManager documentWindowManager = getDocumentWindowManager();
    AsynchClientTask retrieveResultsTask = new AsynchClientTask("Retrieving results", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @SuppressWarnings("unchecked")
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            Simulation[] simsToShow = (Simulation[]) hashTable.get("simsArray");
            for (int i = 0; i < simsToShow.length; i++) {
                final Simulation sim = simsToShow[i];
                final VCSimulationIdentifier vcSimulationIdentifier = sim.getSimulationInfo().getAuthoritativeVCSimulationIdentifier();
                final SimulationWindow simWindow = documentWindowManager.haveSimulationWindow(vcSimulationIdentifier);
                OutputContext outputContext = (OutputContext) hashTable.get("outputContext");
                if (simWindow == null && (viewerType == ViewerType.NativeViewer_only)) {
                    try {
                        // make the manager and wire it up
                        DataViewerController dataViewerController = null;
                        if (!isLocal) {
                            dataViewerController = documentWindowManager.getRequestManager().getDataViewerController(outputContext, sim, 0);
                            // For changes in time or variable
                            documentWindowManager.addDataListener(dataViewerController);
                        } else {
                            // ---- preliminary : construct the localDatasetControllerProvider
                            File primaryDir = ResourceUtil.getLocalRootDir();
                            User usr = sim.getVersion().getOwner();
                            DataSetControllerImpl dataSetControllerImpl = new DataSetControllerImpl(null, primaryDir, null);
                            ExportServiceImpl localExportServiceImpl = new ExportServiceImpl();
                            LocalDataSetControllerProvider localDSCProvider = new LocalDataSetControllerProvider(usr, dataSetControllerImpl, localExportServiceImpl);
                            VCDataManager vcDataManager = new VCDataManager(localDSCProvider);
                            File localSimDir = ResourceUtil.getLocalSimDir(User.tempUser.getName());
                            LocalVCDataIdentifier vcDataId = new LocalVCSimulationDataIdentifier(vcSimulationIdentifier, 0, localSimDir);
                            DataManager dataManager = null;
                            if (sim.isSpatial()) {
                                dataManager = new PDEDataManager(outputContext, vcDataManager, vcDataId);
                            } else {
                                dataManager = new ODEDataManager(outputContext, vcDataManager, vcDataId);
                            }
                            dataViewerController = new SimResultsViewerController(dataManager, sim);
                            dataSetControllerImpl.addDataJobListener(documentWindowManager);
                        }
                        // make the viewer
                        Hashtable<VCSimulationIdentifier, DataViewerController> dataViewerControllers = (Hashtable<VCSimulationIdentifier, DataViewerController>) hashTable.get(H_DATA_VIEWER_CONTROLLERS);
                        if (dataViewerControllers == null) {
                            dataViewerControllers = new Hashtable<VCSimulationIdentifier, DataViewerController>();
                            hashTable.put(H_DATA_VIEWER_CONTROLLERS, dataViewerControllers);
                        }
                        dataViewerControllers.put(vcSimulationIdentifier, dataViewerController);
                    } catch (Throwable exc) {
                        exc.printStackTrace(System.out);
                        saveFailure(hashTable, sim, exc);
                    }
                }
            }
        }
    };
    taskList.add(retrieveResultsTask);
    AsynchClientTask displayResultsTask = new AsynchClientTask("Showing results", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @SuppressWarnings("unchecked")
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            boolean isLocal = fetch(hashTable, H_LOCAL_SIM, Boolean.class, true);
            SimulationWindow.LocalState localState = isLocal ? LocalState.LOCAL : LocalState.SERVER;
            Hashtable<Simulation, Throwable> failures = (Hashtable<Simulation, Throwable>) hashTable.get(H_FAILURES);
            Simulation[] simsToShow = (Simulation[]) hashTable.get("simsArray");
            for (int i = 0; i < simsToShow.length; i++) {
                final Simulation sim = simsToShow[i];
                if (failures != null && failures.containsKey(sim)) {
                    continue;
                }
                final VCSimulationIdentifier vcSimulationIdentifier = simsToShow[i].getSimulationInfo().getAuthoritativeVCSimulationIdentifier();
                final SimulationWindow simWindow = documentWindowManager.haveSimulationWindow(vcSimulationIdentifier);
                if (simWindow != null) {
                    ChildWindowManager childWindowManager = ChildWindowManager.findChildWindowManager(documentWindowManager.getComponent());
                    ChildWindow childWindow = childWindowManager.getChildWindowFromContext(simWindow);
                    if (childWindow == null) {
                        childWindow = childWindowManager.addChildWindow(simWindow.getDataViewer(), simWindow);
                        childWindow.pack();
                        childWindow.setIsCenteredOnParent();
                        childWindow.show();
                    }
                    setFinalWindow(hashTable, childWindow);
                    simWindow.setLocalState(localState);
                } else {
                    // wire it up the viewer
                    Hashtable<VCSimulationIdentifier, DataViewerController> dataViewerControllers = (Hashtable<VCSimulationIdentifier, DataViewerController>) hashTable.get(H_DATA_VIEWER_CONTROLLERS);
                    DataViewerController viewerController = dataViewerControllers.get(vcSimulationIdentifier);
                    Throwable ex = (failures == null ? null : failures.get(sim));
                    if (viewerController != null && ex == null) {
                        // no failure
                        DataViewer viewer = viewerController.createViewer();
                        getSimWorkspace().getSimulationOwner().getOutputFunctionContext().addPropertyChangeListener(viewerController);
                        documentWindowManager.addExportListener(viewer);
                        // For data related activities such as calculating statistics
                        documentWindowManager.addDataJobListener(viewer);
                        viewer.setSimulationModelInfo(new SimulationWorkspaceModelInfo(getSimWorkspace().getSimulationOwner(), sim.getName()));
                        viewer.setDataViewerManager(documentWindowManager);
                        SimulationWindow newWindow = new SimulationWindow(vcSimulationIdentifier, sim, getSimWorkspace().getSimulationOwner(), viewer);
                        BeanUtils.addCloseWindowKeyboardAction(newWindow.getDataViewer());
                        documentWindowManager.addResultsFrame(newWindow);
                        setFinalWindow(hashTable, viewer);
                        newWindow.setLocalState(localState);
                    }
                }
            }
            StringBuffer failMessage = new StringBuffer();
            if (failures != null) {
                if (!failures.isEmpty()) {
                    failMessage.append("Error, " + failures.size() + " of " + simsToShow.length + " sim results failed to display:\n");
                    Enumeration<Simulation> en = failures.keys();
                    while (en.hasMoreElements()) {
                        Simulation sim = en.nextElement();
                        Throwable exc = (Throwable) failures.get(sim);
                        failMessage.append("'" + sim.getName() + "' - " + exc.getMessage());
                    }
                }
            }
            if (failMessage.length() > 0) {
                PopupGenerator.showErrorDialog(ClientSimManager.this.getDocumentWindowManager(), failMessage.toString());
            }
        }
    };
    if (viewerType == ViewerType.NativeViewer_only) {
        taskList.add(displayResultsTask);
    }
    // Dispatch the tasks using the ClientTaskDispatcher.
    AsynchClientTask[] taskArray = new AsynchClientTask[taskList.size()];
    taskList.toArray(taskArray);
    return taskArray;
}

Example 2 with DataViewer

use of cbit.vcell.client.data.DataViewer in project vcell by virtualcell.

the class TestingFrameworkWindowManager method viewResults.

/**
 * Insert the method's description here.
 * Creation date: (1/20/2003 11:52:18 AM)
 * @return boolean
 * @param mathDesc cbit.vcell.math.MathDescription
 */
public void viewResults(TestCriteriaNew testCriteria) {
    VCDataIdentifier vcdID = new VCSimulationDataIdentifier(testCriteria.getSimInfo().getAuthoritativeVCSimulationIdentifier(), 0);
    // get the data manager and wire it up
    try (SuppressRemote sr = new VCellThreadChecker.SuppressRemote()) {
        // okay to call remote from Swing for testing
        Simulation sim = ((ClientDocumentManager) getRequestManager().getDocumentManager()).getSimulation(testCriteria.getSimInfo());
        DataViewerController dataViewerCtr = getRequestManager().getDataViewerController(null, sim, 0);
        addDataListener(dataViewerCtr);
        // make the viewer
        DataViewer viewer = dataViewerCtr.createViewer();
        viewer.setDataViewerManager(this);
        addExportListener(viewer);
        // create the simCompareWindow - this is just a lightweight window to display the simResults.
        // It was created originally to compare 2 sims, it can also be used here instead of creating the more heavy-weight SimWindow.
        ChildWindowManager childWindowManager = TFWFinder.findChildWindowManager(getComponent());
        ChildWindow childWindow = childWindowManager.addChildWindow(viewer, vcdID, "Comparing ... " + vcdID, true);
        childWindow.setIsCenteredOnParent();
        childWindow.pack();
        childWindow.show();
    } catch (Throwable e) {
        PopupGenerator.showErrorDialog(TestingFrameworkWindowManager.this, e.getMessage());
    }
}

Example 3 with DataViewer

use of cbit.vcell.client.data.DataViewer in project vcell by virtualcell.

the class TestingFrameworkWindowManager method compare.

/**
 * Insert the method's description here.
 * Creation date: (1/20/2003 11:52:18 AM)
 * @return boolean
 * @param mathDesc cbit.vcell.math.MathDescription
 */
public void compare(final TestCriteriaNew testCriteria, final SimulationInfo userDefinedRegrSimInfo) {
    final String KEY_MERGEDDATAINFO = "KEY_MERGEDDATAINFO";
    final String KEY_MERGEDDATASETVIEWERCNTRLR = "KEY_MERGEDDATASETVIEWERCNTRLR";
    AsynchClientTask gatherDataTask = new AsynchClientTask("Gathering compare Dta...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            // create the merged data for the simulationInfo in testCriteria and the regression simInfo
            SimulationInfo simInfo = testCriteria.getSimInfo();
            SimulationInfo regrSimInfo = null;
            if (userDefinedRegrSimInfo != null) {
                regrSimInfo = userDefinedRegrSimInfo;
            } else {
                regrSimInfo = testCriteria.getRegressionSimInfo();
            }
            if (regrSimInfo == null) {
                return;
            }
            VCDataIdentifier vcSimId1 = new VCSimulationDataIdentifier(simInfo.getAuthoritativeVCSimulationIdentifier(), 0);
            VCDataIdentifier vcSimId2 = new VCSimulationDataIdentifier(regrSimInfo.getAuthoritativeVCSimulationIdentifier(), 0);
            User user = simInfo.getOwner();
            VCDataIdentifier[] vcIdentifierArray = new VCDataIdentifier[] { vcSimId2, vcSimId1 };
            MergedDataInfo mergedDataInfo = new MergedDataInfo(user, vcIdentifierArray, MergedDataInfo.createDefaultPrefixNames(vcIdentifierArray.length));
            hashTable.put(KEY_MERGEDDATAINFO, mergedDataInfo);
            // get the data manager and wire it up
            // 
            // get all "Data1.XXX" data identifiers ... and remove those which are functions
            // add functions of the form DIFF_XXX = (Data1.XXX - Data2.XXX) for convenience in comparing results.
            // 
            Simulation sim1 = ((ClientDocumentManager) getRequestManager().getDocumentManager()).getSimulation(simInfo);
            Simulation sim2 = ((ClientDocumentManager) getRequestManager().getDocumentManager()).getSimulation(regrSimInfo);
            boolean isSpatial = sim1.isSpatial();
            if (sim2.isSpatial() != isSpatial) {
                throw new RuntimeException("Cannot compare spatial and non-spatial data sets : " + simInfo + "& " + regrSimInfo);
            }
            DataManager mergedDataManager = getRequestManager().getDataManager(null, mergedDataInfo, isSpatial);
            DataManager data1Manager = getRequestManager().getDataManager(null, vcSimId1, isSpatial);
            DataManager data2Manager = getRequestManager().getDataManager(null, vcSimId2, isSpatial);
            Vector<AnnotatedFunction> functionList = new Vector<AnnotatedFunction>();
            AnnotatedFunction[] data1Functions = data1Manager.getFunctions();
            AnnotatedFunction[] existingFunctions = mergedDataManager.getFunctions();
            DataIdentifier[] data1Identifiers = data1Manager.getDataIdentifiers();
            DataIdentifier[] data2Identifiers = data2Manager.getDataIdentifiers();
            for (int i = 0; i < data1Identifiers.length; i++) {
                // 
                // make sure dataIdentifier is not already a function
                // 
                boolean bIsFunction = false;
                for (int j = 0; j < data1Functions.length; j++) {
                    if (data1Identifiers[i].getName().equals(data1Functions[j].getName())) {
                        bIsFunction = true;
                    }
                }
                if (bIsFunction) {
                    continue;
                }
                // 
                // make sure corresponding identifier exists in "Data2"
                // 
                boolean bIsInData2 = false;
                for (int j = 0; j < data2Identifiers.length; j++) {
                    if (data2Identifiers[j].getName().equals(data1Identifiers[i].getName())) {
                        bIsInData2 = true;
                    }
                }
                if (!bIsInData2) {
                    continue;
                }
                // 
                // create "Diff" function
                // 
                String data1Name = "Data1." + data1Identifiers[i].getName();
                String data2Name = "Data2." + data1Identifiers[i].getName();
                String functionName = "DIFF_" + data1Identifiers[i].getName();
                VariableType varType = data1Identifiers[i].getVariableType();
                Expression exp = new Expression(data1Name + "-" + data2Name);
                AnnotatedFunction newFunction = new AnnotatedFunction(functionName, exp, data1Identifiers[i].getDomain(), "", varType, FunctionCategory.OUTPUTFUNCTION);
                // 
                // make sure new "Diff" function isn't already in existing function list.
                // 
                boolean bDiffFunctionAlreadyHere = false;
                for (int j = 0; j < existingFunctions.length; j++) {
                    if (newFunction.getName().equals(existingFunctions[j].getName())) {
                        bDiffFunctionAlreadyHere = true;
                    }
                }
                if (bDiffFunctionAlreadyHere) {
                    continue;
                }
                functionList.add(newFunction);
            }
            OutputContext outputContext = null;
            if (functionList.size() > 0) {
                AnnotatedFunction[] newDiffFunctions = (AnnotatedFunction[]) BeanUtils.getArray(functionList, AnnotatedFunction.class);
                outputContext = new OutputContext(newDiffFunctions);
            }
            MergedDatasetViewerController mergedDatasetViewerCtr = getRequestManager().getMergedDatasetViewerController(outputContext, mergedDataInfo, !isSpatial);
            hashTable.put(KEY_MERGEDDATASETVIEWERCNTRLR, mergedDatasetViewerCtr);
        }
    };
    AsynchClientTask showResultsTask = new AsynchClientTask("Showing Compare Results", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            // make the viewer
            MergedDatasetViewerController mergedDatasetViewerCtr = (MergedDatasetViewerController) hashTable.get(KEY_MERGEDDATASETVIEWERCNTRLR);
            addDataListener(mergedDatasetViewerCtr);
            DataViewer viewer = mergedDatasetViewerCtr.createViewer();
            viewer.setDataViewerManager(TestingFrameworkWindowManager.this);
            addExportListener(viewer);
            VCDataIdentifier vcDataIdentifier = (MergedDataInfo) hashTable.get(KEY_MERGEDDATAINFO);
            ChildWindowManager childWindowManager = TFWFinder.findChildWindowManager(getComponent());
            ChildWindow childWindow = childWindowManager.addChildWindow(viewer, vcDataIdentifier, "Comparing ... " + vcDataIdentifier.getID());
            childWindow.pack();
            // childWindow.setSize(450, 450);
            childWindow.setIsCenteredOnParent();
            childWindow.show();
        }
    };
    ClientTaskDispatcher.dispatch(getComponent(), new Hashtable<String, Object>(), new AsynchClientTask[] { gatherDataTask, showResultsTask }, false);
}