Examples with VCDocument org.vcell.util.document.VCDocument used on opensource projects

Example 26 with VCDocument

use of org.vcell.util.document.VCDocument in project vcell by virtualcell.

the class TestingFrameworkWindowPanel method getUserSelectedSimulationInfo.

private TFGenerateReport.VCDocumentAndSimInfo getUserSelectedSimulationInfo() throws Exception {
    final String CANCEL_STRING = "Cancel";
    final String BM_STRING = "BioModel";
    final String MM_STRING = "MathModel";
    String result = PopupGenerator.showWarningDialog(this, "Choose Reference Model Type.", new String[] { BM_STRING, MM_STRING, CANCEL_STRING }, CANCEL_STRING);
    if (result == null || result.equals(CANCEL_STRING)) {
        throw UserCancelException.CANCEL_GENERIC;
    }
    VCDocumentInfo userDefinedRegrRefModel = null;
    VCDocument vcDocument = null;
    if (result.equals(BM_STRING)) {
        userDefinedRegrRefModel = getTestingFrameworkWindowManager().getRequestManager().selectBioModelInfo(getTestingFrameworkWindowManager());
        vcDocument = getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().getBioModel(userDefinedRegrRefModel.getVersion().getVersionKey());
    } else {
        userDefinedRegrRefModel = getTestingFrameworkWindowManager().getRequestManager().selectMathModelInfo(getTestingFrameworkWindowManager());
        vcDocument = getTestingFrameworkWindowManager().getRequestManager().getDocumentManager().getMathModel(userDefinedRegrRefModel.getVersion().getVersionKey());
    }
    SimulationInfo simInfo = getTestingFrameworkWindowManager().getUserSelectedRefSimInfo(getTestingFrameworkWindowManager().getRequestManager(), userDefinedRegrRefModel);
    TFGenerateReport.VCDocumentAndSimInfo vcDocumentAndsimInfo = new TFGenerateReport.VCDocumentAndSimInfo(simInfo, vcDocument);
    return vcDocumentAndsimInfo;
}

Example 27 with VCDocument

use of org.vcell.util.document.VCDocument in project vcell by virtualcell.

the class ClientRequestManager method checkBeforeClosing.

/**
 * Insert the method's description here.
 * Creation date: (5/21/2004 4:20:47 AM)
 * @param windowManager cbit.vcell.client.desktop.DocumentWindowManager
 */
private CloseOption checkBeforeClosing(DocumentWindowManager windowManager) {
    getMdiManager().showWindow(windowManager.getManagerID());
    // we need to check for changes and get user confirmation...
    VCDocument vcDocument = windowManager.getVCDocument();
    if (vcDocument.getVersion() == null && !isDifferentFromBlank(vcDocument.getDocumentType(), vcDocument)) {
        return CloseOption.CLOSE_IN_ANY_CASE;
    }
    boolean isChanged = true;
    try {
        isChanged = getDocumentManager().isChanged(vcDocument);
    } catch (Exception exc) {
        exc.printStackTrace();
        String choice = PopupGenerator.showWarningDialog(windowManager, getUserPreferences(), UserMessage.warn_UnableToCheckForChanges, null);
        if (choice.equals(UserMessage.OPTION_CANCEL)) {
            // user canceled
            return CloseOption.CANCEL_CLOSE;
        }
    }
    // warn if necessary
    if (isChanged) {
        String choice = PopupGenerator.showWarningDialog(windowManager, getUserPreferences(), UserMessage.warn_close, null);
        if (choice.equals(UserMessage.OPTION_CANCEL)) {
            // user canceled
            return CloseOption.CANCEL_CLOSE;
        }
        if (choice.equals(UserMessage.OPTION_YES)) {
            return CloseOption.SAVE_AND_CLOSE;
        }
    }
    // nothing changed, or user confirmed, close it
    return CloseOption.CLOSE_IN_ANY_CASE;
}

Example 28 with VCDocument

use of org.vcell.util.document.VCDocument in project vcell by virtualcell.

the class IssueTableModel method getValueAt.

public Object getValueAt(int rowIndex, int columnIndex) {
    VCDocument vcDocument = (issueManager != null) ? (issueManager.getVCDocument()) : null;
    Issue issue = getValueAt(rowIndex);
    switch(columnIndex) {
        case COLUMN_DESCRIPTION:
            return issue;
        case COLUMN_URL:
            {
                String url = issue.getHyperlink();
                if (url == null) {
                    return "";
                }
                return "<html><a href=\"" + url + "\">More</a></html>";
            }
        case COLUMN_SOURCE:
            return getSourceObjectDescription(vcDocument, issue);
        case COLUMN_PATH:
            return getSourceObjectPathDescription(vcDocument, issue);
    }
    return null;
}

Example 29 with VCDocument

use of org.vcell.util.document.VCDocument in project vcell by virtualcell.

the class CheckBeforeDelete method run.

/**
 * Insert the method's description here.
 * Creation date: (5/31/2004 6:04:14 PM)
 * @param hashTable java.util.Hashtable
 * @param clientWorker cbit.vcell.desktop.controls.ClientWorker
 */
public void run(Hashtable<String, Object> hashTable) throws Exception {
    DocumentWindowManager documentWindowManager = (DocumentWindowManager) hashTable.get(CommonTask.DOCUMENT_WINDOW_MANAGER.name);
    // JFrame currentDocumentWindow = (JFrame)hashTable.get("currentDocumentWindow");
    VCDocument currentDocument = documentWindowManager.getVCDocument();
    if (!hashTable.containsKey(SaveDocument.DOC_KEY)) {
        throw new RuntimeException("CheckBeforeDelete task called although SaveDocument task did not complete - should have aborted!!");
    }
    // Don't delete ARCHIVE or PUBLISH  documents
    if (!currentDocument.getVersion().getFlag().compareEqual(VersionFlag.Current)) {
        hashTable.put("conditionalSkip", new String[] { DeleteOldDocument.class.getName() });
        return;
    }
    DocumentManager documentManager = (DocumentManager) hashTable.get(CommonTask.DOCUMENT_MANAGER.name);
    Simulation[] simulations = (Simulation[]) hashTable.get("simulations");
    VCDocument savedDocument = (VCDocument) hashTable.get(SaveDocument.DOC_KEY);
    // just to make sure, verify that we actually did save a new edition
    Version oldVersion = currentDocument.getVersion();
    Version newVersion = savedDocument.getVersion();
    if (newVersion.getVersionKey().compareEqual(oldVersion.getVersionKey())) {
        // throw new DataAccessException("CheckBeforeDelete task called but saved document has same version with current document");
        hashTable.put("conditionalSkip", new String[] { DeleteOldDocument.class.getName() });
        return;
    }
    // we saved a new one, now check for lost simulation data and warn the user
    Simulation[] simulationsWithLostResults = null;
    switch(currentDocument.getDocumentType()) {
        case BIOMODEL_DOC:
            {
                simulationsWithLostResults = checkLostResults((BioModel) currentDocument, (BioModel) savedDocument, documentManager, simulations);
                break;
            }
        case MATHMODEL_DOC:
            {
                simulationsWithLostResults = checkLostResults((MathModel) currentDocument, (MathModel) savedDocument, documentManager, simulations);
                break;
            }
        case GEOMETRY_DOC:
        default:
            // nothing to check for in this case
            return;
    }
    boolean bLost = simulationsWithLostResults != null && simulationsWithLostResults.length > 0;
    if (bLost) {
        String choice = PopupGenerator.showWarningDialog(documentWindowManager, documentWindowManager.getUserPreferences(), UserMessage.question_LostResults, null);
        if (choice.equals(UserMessage.OPTION_SAVE_AS_NEW_EDITION)) {
            // user canceled deletion
            throw UserCancelException.CANCEL_DELETE_OLD;
        }
        if (choice.equals(UserMessage.OPTION_CANCEL)) {
            throw UserCancelException.CANCEL_GENERIC;
        }
    }
}

Example 30 with VCDocument

use of org.vcell.util.document.VCDocument in project vcell by virtualcell.

the class DeleteOldDocument method run.

/**
 * Insert the method's description here.
 * Creation date: (5/31/2004 6:04:14 PM)
 * @param hashTable java.util.Hashtable
 * @param clientWorker cbit.vcell.desktop.controls.ClientWorker
 */
public void run(Hashtable<String, Object> hashTable) throws java.lang.Exception {
    DocumentWindowManager dwm = (DocumentWindowManager) fetch(hashTable, DOCUMENT_WINDOW_MANAGER);
    VCDocument currentDocument = dwm.getVCDocument();
    DocumentManager documentManager = (DocumentManager) fetch(hashTable, DOCUMENT_MANAGER);
    switch(currentDocument.getDocumentType()) {
        case BIOMODEL_DOC:
            {
                // make the info
                BioModel oldBioModel = (BioModel) currentDocument;
                BioModelInfo oldBioModelInfo = documentManager.getBioModelInfo(oldBioModel.getVersion().getVersionKey());
                // delete document
                documentManager.delete(oldBioModelInfo);
                break;
            }
        case MATHMODEL_DOC:
            {
                // make the info
                MathModel oldMathModel = (MathModel) currentDocument;
                MathModelInfo oldMathModelInfo = documentManager.getMathModelInfo(oldMathModel.getVersion().getVersionKey());
                // delete document
                documentManager.delete(oldMathModelInfo);
                break;
            }
        case GEOMETRY_DOC:
            {
                // make the info
                Geometry oldGeometry = (Geometry) currentDocument;
                GeometryInfo oldGeometryInfo = documentManager.getGeometryInfo(oldGeometry.getVersion().getVersionKey());
                // delete document
                documentManager.delete(oldGeometryInfo);
                break;
            }
        default:
            break;
    }
}