Examples with CollapsiblePanel org.vcell.util.gui.CollapsiblePanel used on opensource projects

Example 6 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class SolverTaskDescriptionAdvancedPanel method getGeneralOptionsPanel.

private CollapsiblePanel getGeneralOptionsPanel() {
    if (generalOptionsPanel == null) {
        generalOptionsPanel = new CollapsiblePanel("General");
        generalOptionsPanel.getContentPanel().setLayout(new GridBagLayout());
        java.awt.GridBagConstraints constraintsTimeBoundsPanel = new java.awt.GridBagConstraints();
        constraintsTimeBoundsPanel.gridx = 0;
        constraintsTimeBoundsPanel.gridy = 0;
        constraintsTimeBoundsPanel.fill = java.awt.GridBagConstraints.BOTH;
        constraintsTimeBoundsPanel.weightx = 1.0;
        constraintsTimeBoundsPanel.weighty = 1.0;
        constraintsTimeBoundsPanel.insets = new java.awt.Insets(4, 4, 4, 4);
        generalOptionsPanel.getContentPanel().add(getTimeBoundsPanel(), constraintsTimeBoundsPanel);
        java.awt.GridBagConstraints constraintsTimeStepPanel = new java.awt.GridBagConstraints();
        constraintsTimeStepPanel.gridx = 1;
        constraintsTimeStepPanel.gridy = 0;
        constraintsTimeStepPanel.fill = java.awt.GridBagConstraints.BOTH;
        constraintsTimeStepPanel.weightx = 1.0;
        constraintsTimeStepPanel.weighty = 1.0;
        constraintsTimeStepPanel.insets = new java.awt.Insets(4, 4, 4, 4);
        generalOptionsPanel.getContentPanel().add(getTimeStepPanel(), constraintsTimeStepPanel);
        java.awt.GridBagConstraints constraintsErrorTolerancePanel = new java.awt.GridBagConstraints();
        constraintsErrorTolerancePanel.fill = java.awt.GridBagConstraints.BOTH;
        constraintsErrorTolerancePanel.gridx = 2;
        constraintsErrorTolerancePanel.gridy = 0;
        constraintsErrorTolerancePanel.weightx = 1.0;
        constraintsErrorTolerancePanel.weighty = 1.0;
        constraintsErrorTolerancePanel.insets = new java.awt.Insets(4, 4, 4, 4);
        constraintsErrorTolerancePanel.anchor = GridBagConstraints.FIRST_LINE_START;
        generalOptionsPanel.getContentPanel().add(getErrorTolerancePanel(), constraintsErrorTolerancePanel);
    }
    return generalOptionsPanel;
}

Example 7 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class SolverTaskDescriptionAdvancedPanel method getSensitivityAnalysisPanel.

private CollapsiblePanel getSensitivityAnalysisPanel() {
    if (sensitivityAnalysisCollapsiblePanel == null) {
        sensitivityAnalysisComboBox = new javax.swing.JComboBox();
        performSensitivityAnalysisCheckBox = new JCheckBox("Perform sensitivity analysis");
        sensitivityAnalysisHelpButton = new JButton(" ? ");
        Font font = sensitivityAnalysisHelpButton.getFont().deriveFont(Font.BOLD);
        Border border = BorderFactory.createEmptyBorder(1, 1, 1, 1);
        sensitivityAnalysisHelpButton.setBorder(border);
        sensitivityAnalysisHelpButton.setFont(font);
        sensitivityAnalysisCollapsiblePanel = new CollapsiblePanel("Local Sensitivity Analysis", false);
        sensitivityAnalysisCollapsiblePanel.getContentPanel().setLayout(new GridBagLayout());
        GridBagConstraints gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.insets = new java.awt.Insets(4, 4, 4, 4);
        sensitivityAnalysisCollapsiblePanel.getContentPanel().add(performSensitivityAnalysisCheckBox, gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.weightx = 1.0;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.insets = new java.awt.Insets(4, 4, 4, 4);
        sensitivityAnalysisCollapsiblePanel.getContentPanel().add(sensitivityAnalysisHelpButton, gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.gridwidth = 2;
        gbc.insets = new java.awt.Insets(4, 4, 4, 4);
        sensitivityAnalysisCollapsiblePanel.getContentPanel().add(sensitivityAnalysisComboBox, gbc);
    }
    return sensitivityAnalysisCollapsiblePanel;
}

Example 8 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class StochSimOptionsPanel method initialize.

private void initialize() {
    try {
        getContentPanel().setLayout(new java.awt.GridBagLayout());
        // 1
        JPanel trialPanel = new JPanel(new GridLayout(0, 1));
        trialPanel.add(getTrajectoryButton());
        trialPanel.add(getHistogramButton());
        JPanel panela = new JPanel(new FlowLayout(FlowLayout.LEFT));
        panela.add(getNumOfTrialsLabel());
        panela.add(getJTextFieldNumOfTrials());
        trialPanel.add(panela);
        trialPanel.setBorder(new EtchedBorder());
        // 2
        JPanel seedPanel = new JPanel(new GridLayout(0, 1));
        JPanel panelb = new JPanel(new FlowLayout(FlowLayout.LEFT));
        panelb.add(getRandomSeedRadioButton());
        seedPanel.add(panelb);
        panelb = new JPanel(new FlowLayout(FlowLayout.LEFT));
        panelb.add(getCustomizedSeedRadioButton());
        panelb.add(getJTextFieldCustomSeed());
        seedPanel.add(panelb);
        seedPanel.setBorder(new EtchedBorder());
        CollapsiblePanel advancedPanel = new CollapsiblePanel("Advanced", false);
        advancedPanel.getContentPanel().setLayout(new GridBagLayout());
        // 0
        GridBagConstraints gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.insets = new Insets(4, 4, 4, 4);
        // gbc.weightx = 1.0;
        advancedPanel.getContentPanel().add(getEpsilonLabel(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        advancedPanel.getContentPanel().add(getEpsilonTextField(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 2;
        gbc.gridy = 0;
        // gbc.weightx = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        gbc.anchor = GridBagConstraints.LINE_END;
        advancedPanel.getContentPanel().add(getLambdaLabel(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 3;
        gbc.gridy = 0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        advancedPanel.getContentPanel().add(getLambdaTextField(), gbc);
        // 1
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        // gbc.weightx = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        gbc.anchor = GridBagConstraints.LINE_END;
        advancedPanel.getContentPanel().add(getMSRToleranceLabel(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 1;
        gbc.insets = new Insets(4, 4, 4, 4);
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        advancedPanel.getContentPanel().add(getMSRToleranceTextField(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 2;
        gbc.gridy = 1;
        gbc.insets = new Insets(4, 4, 4, 4);
        // gbc.weightx = 1.0;
        gbc.anchor = GridBagConstraints.LINE_END;
        advancedPanel.getContentPanel().add(getSDEToleranceLabel(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 3;
        gbc.gridy = 1;
        gbc.insets = new Insets(4, 4, 4, 4);
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        advancedPanel.getContentPanel().add(getSDEToleranceTextField(), gbc);
        // 
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.weightx = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        getContentPanel().add(trialPanel, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.insets = new Insets(4, 4, 4, 4);
        getContentPanel().add(seedPanel, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.gridwidth = 2;
        gbc.fill = GridBagConstraints.BOTH;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.insets = new Insets(10, 4, 10, 4);
        getContentPanel().add(advancedPanel, gbc);
        getButtonGroupSeed().add(getRandomSeedRadioButton());
        getButtonGroupSeed().add(getCustomizedSeedRadioButton());
        // trial radio button group
        getButtonGroupTrials().add(getTrajectoryButton());
        getButtonGroupTrials().add(getHistogramButton());
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 9 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class ChomboSolverSpecPanel method initialize.

private void initialize() {
    setMaximumSize(new Dimension(500, 150));
    setPreferredSize(new Dimension(500, 200));
    maxBoxSizeComboBox = new JComboBox<Integer>();
    int start = 8;
    for (int i = 0; i < 9; ++i) {
        maxBoxSizeComboBox.addItem(start);
        start *= 2;
    }
    maxBoxSizeComboBox.addItem(0);
    blockFactorComboBox = new JComboBox<Integer>();
    start = 4;
    for (int i = 0; i < 4; ++i) {
        blockFactorComboBox.addItem(start);
        start *= 2;
    }
    blockFactorComboBox.setEnabled(false);
    checkBoxTagsGrow = new JCheckBox("Tags Grow");
    viewLevelFinestRadioButton = new JRadioButton("Finest");
    viewLevelUserSelectRadioButton = new JRadioButton("Select");
    viewLevelFinestRadioButton.addActionListener(eventHandler);
    viewLevelUserSelectRadioButton.addActionListener(eventHandler);
    ButtonGroup bg = new ButtonGroup();
    bg.add(viewLevelFinestRadioButton);
    bg.add(viewLevelUserSelectRadioButton);
    viewLevelComboBox = new JComboBox<Integer>();
    viewLevelComboBox.setEnabled(false);
    viewLevelComboBox.setRenderer(new DefaultListCellRenderer() {

        @Override
        public Component getListCellRendererComponent(JList<?> list, Object value, int index, boolean isSelected, boolean cellHasFocus) {
            super.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
            if (value != null && (Integer) value <= simulation.getSolverTaskDescription().getChomboSolverSpec().getNumRefinementLevels()) {
                int dim = simulation.getMathDescription().getGeometry().getDimension();
                ISize xyz = simulation.getSolverTaskDescription().getChomboSolverSpec().getLevelSamplingSize(simulation.getMeshSpecification().getSamplingSize(), (Integer) value);
                setText(GuiUtils.getMeshSizeText(dim, xyz, false));
            }
            return this;
        }
    });
    fillRatioTextField = new JTextField();
    fillRatioTextField.addFocusListener(eventHandler);
    CollapsiblePanel southPanel = new CollapsiblePanel("Advanced", false);
    southPanel.getContentPanel().setLayout(new GridBagLayout());
    int gridy = 0;
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 4, 4, 1);
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.anchor = GridBagConstraints.EAST;
    southPanel.getContentPanel().add(new JLabel("Max Box Size"), gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 1, 4, 4);
    gbc.gridx = 1;
    gbc.gridy = gridy;
    gbc.weightx = 0.1;
    gbc.anchor = GridBagConstraints.WEST;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    southPanel.getContentPanel().add(maxBoxSizeComboBox, gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 4, 4, 1);
    gbc.gridx = 2;
    gbc.gridy = gridy;
    gbc.anchor = GridBagConstraints.EAST;
    southPanel.getContentPanel().add(new JLabel("Fill Ratio"), gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 1, 4, 4);
    gbc.gridx = 3;
    gbc.gridy = gridy;
    gbc.weightx = 0.1;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.WEST;
    southPanel.getContentPanel().add(fillRatioTextField, gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 4, 4, 1);
    gbc.gridx = 4;
    gbc.gridy = gridy;
    gbc.anchor = GridBagConstraints.EAST;
    southPanel.getContentPanel().add(new JLabel("Block Factor"), gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 1, 4, 4);
    gbc.gridx = 5;
    gbc.gridy = gridy;
    gbc.weightx = 0.1;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.WEST;
    southPanel.getContentPanel().add(blockFactorComboBox, gbc);
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 1, 4, 4);
    gbc.gridx = 6;
    gbc.gridy = gridy;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.WEST;
    southPanel.getContentPanel().add(checkBoxTagsGrow, gbc);
    JPanel northPanel = new JPanel(new GridBagLayout());
    JLabel lbl = new JLabel("<html>Enter Boolean expressions for regions of interest to refine, and set max refinement level desired for each ROI, where each level doubles the mesh resolution.</html>");
    gbc = new GridBagConstraints();
    gbc.insets = new java.awt.Insets(4, 4, 4, 4);
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.weightx = 1.0;
    northPanel.add(lbl, gbc);
    getContentPanel().setLayout(new BorderLayout(0, 2));
    getContentPanel().add(southPanel, BorderLayout.SOUTH);
    getContentPanel().add(northPanel, BorderLayout.NORTH);
    getContentPanel().add(getRefinementPanel(), BorderLayout.CENTER);
    maxBoxSizeComboBox.addActionListener(eventHandler);
    blockFactorComboBox.addActionListener(eventHandler);
    checkBoxTagsGrow.addActionListener(eventHandler);
}

Example 10 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class BioModelEditorPathwayCommonsPanel method initialize.

private void initialize() {
    searchTextField = new TextFieldAutoCompletion();
    searchTextField.addActionListener(eventHandler);
    searchTextField.putClientProperty("JTextField.variant", "search");
    filterTextField = new TextFieldAutoCompletion();
    filterTextField.addActionListener(eventHandler);
    filterTextField.addKeyListener(eventHandler);
    filterTextField.putClientProperty("JTextField.variant", "filter");
    searchButton = new JButton("Search");
    searchButton.addActionListener(eventHandler);
    sortButton = new JButton("Sort");
    sortButton.addActionListener(eventHandler);
    showPathwayButton = new JButton("Preview");
    showPathwayButton.addActionListener(eventHandler);
    showPathwayButton.setEnabled(false);
    gotoPathwayButton = new JButton("Open Web Link");
    gotoPathwayButton.addActionListener(eventHandler);
    gotoPathwayButton.setEnabled(false);
    responseTree = new JTree();
    responseTreeModel = new ResponseTreeModel();
    responseTree.setModel(responseTreeModel);
    ToolTipManager.sharedInstance().registerComponent(responseTree);
    CollapsiblePanel searchPanel = new CollapsiblePanel("Search", true);
    searchPanel.getContentPanel().setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.LINE_START;
    searchPanel.getContentPanel().add(searchTextField, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 0;
    gbc.insets = new Insets(0, 4, 0, 0);
    searchPanel.getContentPanel().add(searchButton, gbc);
    setPreferredSize(new Dimension(475, 300));
    setLayout(new GridBagLayout());
    int gridy = 0;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.gridwidth = GridBagConstraints.REMAINDER;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 4, 4, 4);
    add(searchPanel, gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.weighty = 1.0;
    gbc.gridwidth = GridBagConstraints.REMAINDER;
    gbc.insets = new Insets(4, 4, 4, 4);
    gbc.fill = GridBagConstraints.BOTH;
    add(new JScrollPane(responseTree), gbc);
    gridy++;
    CollapsiblePanel filterPanel = new CollapsiblePanel("Filter", true);
    filterPanel.getContentPanel().setLayout(new GridBagLayout());
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.insets = new Insets(2, 2, 2, 2);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.LINE_START;
    filterPanel.getContentPanel().add(filterTextField, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 0;
    gbc.insets = new Insets(0, 4, 0, 0);
    filterPanel.getContentPanel().add(sortButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.gridwidth = GridBagConstraints.REMAINDER;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 4, 4, 4);
    filterPanel.expand(true);
    add(filterPanel, gbc);
    // JPanel optionsField = new JPanel(new GridLayout());
    // ButtonGroup buttonGroup = new ButtonGroup();
    // JRadioButton o1, o2, o3;
    // o1 = new JRadioButton(" Entity ");
    // buttonGroup.add(o1);
    // optionsField.add(o1);
    // o2 = new JRadioButton(" Database ");
    // buttonGroup.add(o2);
    // optionsField.add(o2);
    // o3 = new JRadioButton(" Organism ");
    // buttonGroup.add(o3);
    // optionsField.add(o3);
    // o3.setSelected(true);
    // 
    // gridy ++;
    // CollapsiblePanel optionsPanel = new CollapsiblePanel("Group by... ", true);
    // optionsPanel.getContentPanel().setLayout(new GridBagLayout());
    // gbc = new GridBagConstraints();
    // gbc.gridx = 0;
    // gbc.gridy = gridy;
    // gbc.weightx = 1.0;
    // gbc.fill = GridBagConstraints.HORIZONTAL;
    // gbc.anchor = GridBagConstraints.LINE_START;
    // optionsPanel.getContentPanel().add(optionsField, gbc);
    // 
    // gbc = new GridBagConstraints();
    // gbc.gridx = 0;
    // gbc.gridy = gridy;
    // gbc.weightx = 1.0;
    // gbc.gridwidth = GridBagConstraints.REMAINDER;
    // gbc.fill = GridBagConstraints.HORIZONTAL;
    // gbc.insets = new Insets(4,4,4,4);
    // optionsPanel.expand(false);
    // add(optionsPanel, gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 4, 4, 1);
    add(showPathwayButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = gridy;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(4, 1, 4, 4);
    add(gotoPathwayButton, gbc);
    sortButton.setIcon(bAscending ? VCellIcons.sortDownIcon : VCellIcons.sortUpIcon);
    ResponseTreeCellRenderer renderer = new ResponseTreeCellRenderer();
    // renderer.setLeafIcon(null);
    // renderer.setClosedIcon(null);
    // renderer.setOpenIcon(null);
    renderer.setLeafIcon(VCellIcons.pathwayLeafIcon);
    responseTree.setCellRenderer(renderer);
    responseTree.setRootVisible(false);
    responseTree.getSelectionModel().addTreeSelectionListener(eventHandler);
    responseTree.addMouseListener(new MouseAdapter() {

        public void mouseClicked(MouseEvent e) {
            if (e.getClickCount() <= 1) {
                return;
            }
            showPathway();
        }
    });
    responseTree.getSelectionModel().addTreeSelectionListener(new TreeSelectionListener() {

        public void valueChanged(TreeSelectionEvent e) {
            Object obj = responseTree.getLastSelectedPathComponent();
            if (obj == null || !(obj instanceof BioModelNode)) {
                return;
            }
            BioModelNode selectedNode = (BioModelNode) obj;
            Object userObject = selectedNode.getUserObject();
            setSelectedObjects(new Object[] { userObject });
        }
    });
}