Examples with CollapsiblePanel org.vcell.util.gui.CollapsiblePanel used on opensource projects

Example 1 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class BioModelEditorSabioPanel method initialize.

private void initialize() {
    responseTree = new JTree();
    responseTreeModel = new ResponseTreeModel();
    responseTree.setModel(responseTreeModel);
    ToolTipManager.sharedInstance().registerComponent(responseTree);
    setLayout(new BorderLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    JPanel p = new JPanel();
    p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
    // ------- panel 1 ---------------
    JLabel categoryLabel1 = new JLabel("Role: ");
    panel1 = new JPanel();
    panel1.setBorder(BorderFactory.createTitledBorder(" Search "));
    panel1.setLayout(new GridBagLayout());
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    panel1.add(categoryLabel1, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    panel1.add(entityName1, gbc);
    gbc = new GridBagConstraints();
    searchSabioDatabaseButton = new JButton("Search");
    searchSabioDatabaseButton.addActionListener(eventHandler);
    searchSabioDatabaseButton.setEnabled(true);
    gbc.gridx = 2;
    gbc.gridy = 0;
    gbc.weightx = 0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.EAST;
    gbc.insets = new Insets(2, 4, 4, 4);
    panel1.add(searchSabioDatabaseButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    p.add(panel1);
    // ------- panel 2 -----------------
    panel2 = new CollapsiblePanel(" Advanced Search ", false, BorderFactory.createLineBorder(new Color(213, 223, 229)));
    panel2.getContentPanel().setLayout(new GridBagLayout());
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.insets = new Insets(4, 4, 4, 1);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.anchor = GridBagConstraints.LINE_START;
    JLabel categoryLabel2 = new JLabel("Category");
    categoryList2.setSelectedIndex(3);
    categoryList2.addActionListener(eventHandler);
    JLabel entityLabel2 = new JLabel("Entity");
    entityName2.addActionListener(eventHandler);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(2, 2, 2, 0);
    panel2.getContentPanel().add(categoryLabel2, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 1;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(0, 2, 2, 0);
    panel2.getContentPanel().add(categoryList2, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(2, 2, 2, 0);
    panel2.getContentPanel().add(entityLabel2, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 1;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(0, 0, 2, 2);
    panel2.getContentPanel().add(entityName2, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 1;
    gbc.weightx = 1.0;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    p.add(panel2, gbc);
    // ------- tree ------------------
    JPanel p1 = new JPanel(new BorderLayout());
    p1.add(new JScrollPane(responseTree));
    // ------- the panels -------------
    add(p, BorderLayout.NORTH);
    add(p1, BorderLayout.CENTER);
    ResponseTreeCellRenderer renderer = new ResponseTreeCellRenderer();
    // also available kineticLaw2Icon more colorful
    renderer.setLeafIcon(VCellIcons.kineticLawIcon);
    responseTree.setCellRenderer(renderer);
    responseTree.setRootVisible(false);
    responseTree.getSelectionModel().addTreeSelectionListener(eventHandler);
    // responseTree.addMouseListener( new MouseAdapter(){
    // public void mouseClicked(MouseEvent e){
    // if (e.getClickCount() <= 1) {
    // return;
    // }
    // treeSelectionChanged();	// for double click
    // }
    // });
    responseTree.getSelectionModel().addTreeSelectionListener(new TreeSelectionListener() {

        public void valueChanged(TreeSelectionEvent e) {
            Object obj = responseTree.getLastSelectedPathComponent();
            if (obj == null || !(obj instanceof BioModelNode)) {
                return;
            }
            BioModelNode selectedNode = (BioModelNode) obj;
            Object userObject = selectedNode.getUserObject();
            setSelectedObjects(new Object[] { userObject });
        }
    });
}

Example 2 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class ReactionPropertiesPanel method initialize.

private void initialize() {
    try {
        setName("KineticsTypeTemplatePanel");
        setLayout(new java.awt.GridBagLayout());
        nameTextField = new JTextField();
        nameTextField.setEditable(false);
        nameTextField.addFocusListener(eventHandler);
        nameTextField.addActionListener(eventHandler);
        isReversibleCheckBox = new JCheckBox("");
        isReversibleCheckBox.addActionListener(eventHandler);
        isReversibleCheckBox.setBackground(Color.white);
        // isReversibleCheckBox.setHorizontalTextPosition(SwingConstants.LEFT);
        electricalPropertiesLabel = new JLabel("Electrical Properties");
        electricalPropertiesLabel.setVisible(false);
        reactionElectricalPropertiesPanel = new ReactionElectricalPropertiesPanel();
        reactionElectricalPropertiesPanel.setVisible(false);
        int gridy = 0;
        GridBagConstraints gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.insets = new java.awt.Insets(2, 4, 4, 4);
        gbc.anchor = GridBagConstraints.LINE_END;
        add(new JLabel("Reaction Name"), gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.insets = new java.awt.Insets(2, 4, 4, 4);
        gbc.weightx = 1.0;
        gbc.gridwidth = 3;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        add(nameTextField, gbc);
        gridy++;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.anchor = java.awt.GridBagConstraints.LINE_END;
        gbc.insets = new java.awt.Insets(0, 4, 4, 4);
        add(electricalPropertiesLabel, gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.gridwidth = 3;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.insets = new java.awt.Insets(0, 4, 0, 4);
        add(reactionElectricalPropertiesPanel, gbc);
        // ----------------------------------------------------------------
        JPanel p = new JPanel();
        p.setLayout(new GridBagLayout());
        p.setBackground(Color.white);
        int gridyy = 0;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridyy;
        gbc.anchor = GridBagConstraints.LINE_END;
        p.add(new JLabel("Reversible"), gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = gridyy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        p.add(isReversibleCheckBox, gbc);
        gridy++;
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.weightx = 0;
        gbc.insets = new Insets(0, 4, 4, 4);
        gbc.anchor = GridBagConstraints.WEST;
        gbc.fill = GridBagConstraints.NONE;
        add(p, gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.LINE_END;
        gbc.insets = new java.awt.Insets(0, 4, 4, 4);
        add(new JLabel("Kinetic Type"), gbc);
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 2;
        gbc.gridy = gridy;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.insets = new java.awt.Insets(0, 4, 4, 4);
        add(getKineticsTypeComboBox(), gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 3;
        gbc.gridy = gridy;
        gbc.insets = new java.awt.Insets(0, 4, 4, 4);
        add(getJToggleButton(), gbc);
        gridy++;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.fill = java.awt.GridBagConstraints.BOTH;
        gbc.weightx = 1.0;
        gbc.weighty = 1.0;
        gbc.gridwidth = 4;
        add(getScrollPaneTable().getEnclosingScrollPane(), gbc);
        CollapsiblePanel collapsiblePanel = new CollapsiblePanel("Annotation and Pathway Links", true);
        collapsiblePanel.getContentPanel().setLayout(new GridBagLayout());
        JPanel jp1 = new JPanel();
        jp1.setLayout(new GridBagLayout());
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.anchor = GridBagConstraints.LINE_START;
        JLabel pathwayLink = new JLabel("Linked Pathway Object(s): ");
        jp1.add(pathwayLink, gbc);
        linkedPOScrollPane = new JScrollPane();
        gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = 0;
        gbc.weightx = 1.0;
        gbc.gridwidth = GridBagConstraints.REMAINDER;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        jp1.add(linkedPOScrollPane, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 0;
        gbc.weightx = 1.0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.anchor = GridBagConstraints.LINE_START;
        collapsiblePanel.getContentPanel().add(jp1, gbc);
        annotationTextArea = new JTextArea(2, 20);
        annotationTextArea.setLineWrap(true);
        annotationTextArea.setWrapStyleWord(true);
        annotationTextArea.setFont(new Font("monospaced", Font.PLAIN, 11));
        gbc = new GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = 1;
        gbc.weightx = 1.0;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.anchor = GridBagConstraints.LINE_START;
        JScrollPane jp2 = new JScrollPane(annotationTextArea);
        collapsiblePanel.getContentPanel().add(jp2, gbc);
        gridy++;
        gbc = new java.awt.GridBagConstraints();
        gbc.gridx = 0;
        gbc.gridy = gridy;
        gbc.gridwidth = 4;
        gbc.weightx = 1.0;
        gbc.weighty = 0.2;
        gbc.fill = java.awt.GridBagConstraints.HORIZONTAL;
        add(collapsiblePanel, gbc);
        setBackground(Color.white);
        getKineticsTypeComboBox().addActionListener(eventHandler);
        getKineticsTypeComboBox().setEnabled(false);
        initKineticChoices();
        initConnections();
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
// user code begin {2}
// user code end
}

Example 3 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class ODESolverPlotSpecificationPanel method getFilterPanel.

/**
 * Return the YAxisLabel property value.
 * @return javax.swing.JLabel
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private CollapsiblePanel getFilterPanel() {
    if (filterPanel == null) {
        try {
            filterPanel = new CollapsiblePanel("Display Options:", false);
            filterPanel.setName("filterPanel");
        // ivjYAxisLabel.setText("Y Axis:");
        // user code begin {1}
        // user code end
        } catch (java.lang.Throwable ivjExc) {
            // user code begin {2}
            // user code end
            handleException(ivjExc);
        }
    }
    return filterPanel;
}

Example 4 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class SimulationSummaryPanel method initialize.

/**
 * Initialize the class.
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private void initialize() {
    try {
        setName("SimulationSummaryPanel");
        setLayout(new java.awt.GridBagLayout());
        int gridy = 0;
        GridBagConstraints constraintsJLabel2 = new GridBagConstraints();
        constraintsJLabel2.gridx = 0;
        constraintsJLabel2.gridy = gridy;
        constraintsJLabel2.anchor = GridBagConstraints.LINE_END;
        constraintsJLabel2.insets = new Insets(4, 4, 4, 4);
        add(new JLabel("Annotation:"), constraintsJLabel2);
        GridBagConstraints constraintsJScrollPane1 = new GridBagConstraints();
        constraintsJScrollPane1.gridx = 1;
        constraintsJScrollPane1.gridy = gridy;
        constraintsJScrollPane1.gridwidth = GridBagConstraints.REMAINDER;
        constraintsJScrollPane1.fill = GridBagConstraints.BOTH;
        constraintsJScrollPane1.weightx = 1.0;
        constraintsJScrollPane1.insets = new Insets(4, 4, 4, 4);
        add(new JScrollPane(getJTextAreaDescription()), constraintsJScrollPane1);
        gridy++;
        GridBagConstraints constraintsJLabel3 = new GridBagConstraints();
        constraintsJLabel3.gridx = 0;
        constraintsJLabel3.gridy = gridy;
        constraintsJLabel3.anchor = GridBagConstraints.EAST;
        constraintsJLabel3.insets = new Insets(4, 4, 4, 4);
        // Time:
        add(new JLabel("Settings:"), constraintsJLabel3);
        GridBagConstraints gbc = new GridBagConstraints();
        gbc.gridx = 1;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.weightx = 1.0;
        gbc.gridwidth = 3;
        gbc.anchor = GridBagConstraints.LINE_START;
        gbc.insets = new Insets(4, 4, 4, 4);
        add(getSettingsPanel(), gbc);
        gridy++;
        GridBagConstraints constraintsJLabel11 = new GridBagConstraints();
        constraintsJLabel11.gridx = 0;
        constraintsJLabel11.gridy = gridy;
        constraintsJLabel11.anchor = GridBagConstraints.EAST;
        constraintsJLabel11.insets = new Insets(4, 4, 4, 4);
        // Mesh:
        add(getJLabel11(), constraintsJLabel11);
        GridBagConstraints constraintsJLabelMesh = new GridBagConstraints();
        constraintsJLabelMesh.gridx = 1;
        constraintsJLabelMesh.gridy = gridy;
        constraintsJLabelMesh.weightx = 1.0;
        constraintsJLabelMesh.gridwidth = 2;
        constraintsJLabelMesh.fill = GridBagConstraints.HORIZONTAL;
        constraintsJLabelMesh.insets = new Insets(4, 4, 4, 4);
        add(getJLabelMesh(), constraintsJLabelMesh);
        GridBagConstraints constraintsJLabel8 = new GridBagConstraints();
        constraintsJLabel8.gridx = 3;
        constraintsJLabel8.gridy = gridy;
        constraintsJLabel8.anchor = GridBagConstraints.EAST;
        constraintsJLabel8.insets = new Insets(4, 4, 4, 4);
        // Geometry Size
        add(getJLabel8(), constraintsJLabel8);
        GridBagConstraints constraintsJLabelGeometrySize = new GridBagConstraints();
        constraintsJLabelGeometrySize.gridx = 4;
        constraintsJLabelGeometrySize.gridy = gridy;
        constraintsJLabelGeometrySize.weightx = 1.0;
        constraintsJLabelGeometrySize.fill = GridBagConstraints.HORIZONTAL;
        constraintsJLabelGeometrySize.insets = new Insets(4, 4, 4, 4);
        add(getJLabelGeometrySize(), constraintsJLabelGeometrySize);
        gridy++;
        GridBagConstraints constraints = new GridBagConstraints();
        constraints.gridx = 0;
        constraints.gridy = gridy;
        constraints.anchor = GridBagConstraints.EAST;
        constraints.insets = new Insets(4, 4, 4, 4);
        labelMeshRefinementTitle = new JLabel("Mesh Refinement:");
        add(labelMeshRefinementTitle, constraints);
        constraints = new GridBagConstraints();
        constraints.gridx = 1;
        constraints.gridy = gridy;
        constraints.fill = GridBagConstraints.HORIZONTAL;
        constraints.gridwidth = 2;
        constraints.insets = new Insets(4, 4, 4, 4);
        add(getJLabelMeshRefinement(), constraints);
        constraints = new GridBagConstraints();
        constraints.gridx = 3;
        constraints.gridy = gridy;
        constraints.anchor = GridBagConstraints.EAST;
        constraints.insets = new Insets(4, 4, 4, 4);
        labelFinestMeshTitle = new JLabel("Finest Level Mesh:");
        add(labelFinestMeshTitle, constraints);
        constraints = new GridBagConstraints();
        constraints.gridx = 4;
        constraintsJLabelMesh.gridy = gridy;
        constraints.fill = GridBagConstraints.HORIZONTAL;
        constraints.gridwidth = GridBagConstraints.REMAINDER;
        constraints.insets = new Insets(4, 4, 4, 4);
        labelFinestMesh = new JLabel();
        labelFinestMesh.setForeground(java.awt.Color.blue);
        add(labelFinestMesh, constraints);
        gridy++;
        constraints = new GridBagConstraints();
        constraints.gridx = 0;
        constraints.gridy = gridy;
        constraints.anchor = GridBagConstraints.EAST;
        constraints.insets = new Insets(4, 4, 4, 4);
        labelRefinementRoiTitle = new JLabel("Refinement ROI(s):");
        add(labelRefinementRoiTitle, constraints);
        constraints = new GridBagConstraints();
        constraints.gridx = 1;
        constraintsJLabelMesh.gridy = gridy;
        constraints.fill = GridBagConstraints.HORIZONTAL;
        constraints.gridwidth = 2;
        constraints.insets = new Insets(4, 4, 4, 4);
        add(getRefinementRoi(), constraints);
        gbc = new GridBagConstraints();
        gbc.gridx = 3;
        gbc.gridy = gridy;
        gbc.anchor = GridBagConstraints.EAST;
        gbc.insets = new Insets(4, 4, 4, 4);
        labelViewLevelMeshTitle = new JLabel("View Level Mesh:");
        add(labelViewLevelMeshTitle, gbc);
        gbc = new GridBagConstraints();
        gbc.gridx = 4;
        gbc.gridy = gridy;
        gbc.fill = GridBagConstraints.HORIZONTAL;
        gbc.gridwidth = GridBagConstraints.REMAINDER;
        gbc.insets = new Insets(4, 4, 4, 4);
        labelViewLevelMesh = new JLabel();
        labelViewLevelMesh.setForeground(Color.blue);
        add(labelViewLevelMesh, gbc);
        gridy++;
        GridBagConstraints constraintsMathOverridesPanel1 = new GridBagConstraints();
        constraintsMathOverridesPanel1.gridx = 0;
        constraintsMathOverridesPanel1.gridy = gridy;
        constraintsMathOverridesPanel1.gridwidth = GridBagConstraints.REMAINDER;
        constraintsMathOverridesPanel1.fill = GridBagConstraints.BOTH;
        constraintsMathOverridesPanel1.weightx = 1.0;
        constraintsMathOverridesPanel1.weighty = 1.0;
        constraintsMathOverridesPanel1.insets = new Insets(4, 4, 4, 4);
        CollapsiblePanel collapsiblePanel = new CollapsiblePanel("Parameters with values changed from defaults");
        collapsiblePanel.getContentPanel().setLayout(new BorderLayout());
        collapsiblePanel.getContentPanel().add(getMathOverridesPanel1(), BorderLayout.CENTER);
        add(collapsiblePanel, constraintsMathOverridesPanel1);
        getJTextAreaDescription().addFocusListener(ivjEventHandler);
    } catch (java.lang.Throwable ivjExc) {
        handleException(ivjExc);
    }
}

Example 5 with CollapsiblePanel

use of org.vcell.util.gui.CollapsiblePanel in project vcell by virtualcell.

the class SolverTaskDescriptionAdvancedPanel method getMiscPanel.

private CollapsiblePanel getMiscPanel() {
    if (miscPanel == null) {
        miscPanel = new CollapsiblePanel("Miscellaneous", false);
        miscPanel.setName("MiscPanel");
        miscPanel.getContentPanel().setLayout(new java.awt.GridBagLayout());
        int gridy = 0;
        // 0
        serialParameterScanCheckBox = new JCheckBox("Run Parameter Scan Serially");
        GridBagConstraints gridbag1 = new java.awt.GridBagConstraints();
        gridbag1.gridx = 0;
        gridbag1.gridy = gridy;
        gridbag1.weightx = 1.0;
        gridbag1.fill = GridBagConstraints.HORIZONTAL;
        gridbag1.insets = new java.awt.Insets(0, 0, 5, 0);
        miscPanel.getContentPanel().add(serialParameterScanCheckBox, gridbag1);
        // 1
        gridy++;
        stopAtSpatiallyUniformPanel = new StopAtSpatiallyUniformPanel();
        gridbag1 = new java.awt.GridBagConstraints();
        gridbag1.gridx = 0;
        gridbag1.gridy = gridy;
        gridbag1.fill = GridBagConstraints.HORIZONTAL;
        gridbag1.weightx = 1.0;
        gridbag1.insets = new java.awt.Insets(0, 0, 5, 0);
        miscPanel.getContentPanel().add(stopAtSpatiallyUniformPanel, gridbag1);
        // 2
        gridy++;
        dataProcessingInstructionPanel = new DataProcessingInstructionPanel();
        gridbag1 = new java.awt.GridBagConstraints();
        gridbag1.gridx = 0;
        gridbag1.gridy = gridy;
        gridbag1.fill = GridBagConstraints.HORIZONTAL;
        gridbag1.weightx = 1.0;
        gridbag1.insets = new java.awt.Insets(0, 0, 0, 10);
        miscPanel.getContentPanel().add(dataProcessingInstructionPanel, gridbag1);
    }
    return miscPanel;
}