Examples with DatasetInputImage sc.fiji.labkit.ui.inputimage.DatasetInputImage used on opensource projects

Example 21 with DatasetInputImage

use of sc.fiji.labkit.ui.inputimage.DatasetInputImage in project labkit-ui by juglab.

the class LabeledImage method snapshot.

/**
 * Returns an up to date {@link ImageLabelingModel}. But doesn't guarantee for
 * changes to be tracked, or to keep the reference.
 */
public ImageLabelingModel snapshot() {
    if (imageLabelingModel != null)
        return imageLabelingModel;
    DatasetInputImage inputImage = openInputImage();
    inputImage.setDefaultLabelingFilename(modifiedLabelingFile);
    Labeling labeling = openOrEmptyLabeling(storedIn.get(), inputImage.imageForSegmentation());
    ImageLabelingModel imageLabelingModel = new ImageLabelingModel(inputImage);
    imageLabelingModel.labeling().set(labeling);
    return imageLabelingModel;
}

Example 22 with DatasetInputImage

use of sc.fiji.labkit.ui.inputimage.DatasetInputImage in project labkit-ui by juglab.

the class CustomizedSegmentationComponentDemo method main.

public static void main(String... args) {
    JFrame frame = new JFrame("Labkit UI Customization Demo");
    ImgPlus<?> image = VirtualStackAdapter.wrap(new ImagePlus("https://imagej.nih.gov/ij/images/t1-head.zip"));
    DefaultSegmentationModel segmentationModel = new DefaultSegmentationModel(new Context(), new DatasetInputImage(image));
    CustomizedSegmentationComponentDemo component = new CustomizedSegmentationComponentDemo(frame, segmentationModel);
    component.autoContrast();
    frame.setJMenuBar(component.getMenuBar());
    frame.add(component);
    frame.setSize(800, 500);
    frame.setVisible(true);
}

Example 23 with DatasetInputImage

use of sc.fiji.labkit.ui.inputimage.DatasetInputImage in project labkit-ui by juglab.

the class MultiChannelMovieDemo method main1.

private static void main1() {
    byte[] pixels = { -1, -1, -1, -1, 0, 0, 0, 0, -1, 0, -1, 0, -1, 0, -1, 0 };
    ArrayImg<UnsignedByteType, ByteArray> image = ArrayImgs.unsignedBytes(pixels, 2, 2, 2, 2);
    assertEquals(16, pixels.length);
    AxisType[] axes = { Axes.X, Axes.Y, Axes.Z, Axes.CHANNEL };
    DatasetInputImage inputImage = new DatasetInputImage(new ImgPlus<>(image, "", axes), BdvShowable.wrap(Views.hyperSlice(image, 3, 0)));
    LabkitFrame.showForImage(new Context(), inputImage);
}

Example 24 with DatasetInputImage

use of sc.fiji.labkit.ui.inputimage.DatasetInputImage in project labkit-ui by juglab.

the class MultiChannelMovieDemo method inputImage5d.

private static DatasetInputImage inputImage5d() {
    Img<UnsignedByteType> image = image5d();
    AxisType[] axes = { Axes.X, Axes.Y, Axes.Z, Axes.CHANNEL, Axes.TIME };
    DatasetInputImage inputImage = new DatasetInputImage(new ImgPlus<>(image, "title", axes), BdvShowable.wrap(Views.hyperSlice(image, 3, 0)));
    return inputImage;
}

Example 25 with DatasetInputImage

use of sc.fiji.labkit.ui.inputimage.DatasetInputImage in project labkit-ui by juglab.

the class CustomSegmenterDemo method main.

public static void main(String... args) {
    LegacyInjector.preinit();
    Img<? extends NumericType<?>> image = ImageJFunctions.wrap(new ImagePlus("https://imagej.nih.gov/ij/images/AuPbSn40-2.jpg"));
    LabkitFrame.showForImage(null, new DatasetInputImage(image));
}