Examples with SegmentationPlugin sc.fiji.labkit.ui.segmentation.SegmentationPlugin used on opensource projects

Example 1 with SegmentationPlugin

use of sc.fiji.labkit.ui.segmentation.SegmentationPlugin in project labkit-ui by juglab.

the class SegmentationUseCaseTest method test.

@Test
public void test() {
    ImgPlus<UnsignedByteType> image = new ImgPlus<>(ArrayImgs.unsignedBytes(new byte[] { 1, 1, 2, 2 }, 2, 2));
    InputImage inputImage = new DatasetInputImage(image);
    SegmentationModel segmentationModel = new DefaultSegmentationModel(new Context(), inputImage);
    addLabels(segmentationModel.imageLabelingModel());
    SegmentationPlugin plugin = PixelClassificationPlugin.create();
    SegmentationItem segmenter = segmentationModel.segmenterList().addSegmenter(plugin);
    segmenter.train(Collections.singletonList(new ValuePair<>(image, segmentationModel.imageLabelingModel().labeling().get())));
    RandomAccessibleInterval<ShortType> result = segmenter.results(segmentationModel.imageLabelingModel()).segmentation();
    List<Integer> list = new ArrayList<>();
    Views.iterable(result).forEach(x -> list.add(x.getInteger()));
    assertEquals(Arrays.asList(1, 1, 0, 0), list);
}

Example 2 with SegmentationPlugin

use of sc.fiji.labkit.ui.segmentation.SegmentationPlugin in project labkit-ui by juglab.

the class SegmenterPanel method showAddSegmenterPopupMenu.

private void showAddSegmenterPopupMenu() {
    SegmentationPluginService pluginService = segmentationModel.context().service(SegmentationPluginService.class);
    List<SegmentationPlugin> plugins = pluginService.getSegmentationPlugins();
    JPopupMenu menu = new JPopupMenu();
    for (SegmentationPlugin plugin : plugins) {
        JMenuItem menuItem = new JMenuItem(plugin.getTitle());
        menuItem.addActionListener(ignore -> addSegmenter(plugin));
        menu.add(menuItem);
    }
    menu.show(addSegmenterButton, 0, addSegmenterButton.getHeight());
}

Example 3 with SegmentationPlugin

use of sc.fiji.labkit.ui.segmentation.SegmentationPlugin in project labkit-ui by juglab.

the class AddSegmenterPanel method addButtons.

private void addButtons(SegmenterListModel segmenterListModel, JPanel list) {
    Context context = segmenterListModel.context();
    SegmentationPluginService pluginService = context.service(SegmentationPluginService.class);
    for (SegmentationPlugin sp : pluginService.getSegmentationPlugins()) {
        JButton button = new JButton(sp.getTitle());
        button.addActionListener(ignore -> {
            segmenterListModel.addSegmenter(sp);
        });
        list.add(button, "grow, wrap");
    }
}