Examples with CompositeSequenceMapSummary ubic.gemma.core.analysis.sequence.CompositeSequenceMapSummary used on opensource projects

Example 1 with CompositeSequenceMapSummary

use of ubic.gemma.core.analysis.sequence.CompositeSequenceMapSummary in project Gemma by PavlidisLab.

the class ArrayDesignMapSummaryCli method doWork.

@Override
protected Exception doWork(String[] args) {
    Exception err = this.processCommandLine(args);
    if (err != null)
        return err;
    ArrayDesignMapResultService arrayDesignMapResultService = this.getBean(ArrayDesignMapResultService.class);
    for (ArrayDesign arrayDesign : this.arrayDesignsToProcess) {
        ArrayDesign thawed = this.thaw(arrayDesign);
        Collection<CompositeSequenceMapSummary> results = arrayDesignMapResultService.summarizeMapResults(thawed);
        System.out.println(CompositeSequenceMapSummary.HEADER);
        for (CompositeSequenceMapSummary summary : results) {
            System.out.println(summary);
        }
    }
    return null;
}