Examples with ProcessedExpressionDataVectorService ubic.gemma.persistence.service.expression.bioAssayData.ProcessedExpressionDataVectorService used on opensource projects

Example 1 with ProcessedExpressionDataVectorService

use of ubic.gemma.persistence.service.expression.bioAssayData.ProcessedExpressionDataVectorService in project Gemma by PavlidisLab.

the class OrderVectorsByDesignCli method doWork.

@Override
protected Exception doWork(String[] args) {
    Exception e = super.processCommandLine(args);
    if (e != null)
        return e;
    ProcessedExpressionDataVectorService processedExpressionDataVectorService = this.getBean(ProcessedExpressionDataVectorService.class);
    for (BioAssaySet ee : this.expressionExperiments) {
        if (!(ee instanceof ExpressionExperiment)) {
            continue;
        }
        ee = this.eeService.thawLite((ExpressionExperiment) ee);
        processedExpressionDataVectorService.reorderByDesign(ee.getId());
    }
    return null;
}