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Example 16 with DataType

use of ucar.ma2.DataType in project ma-core-public by infiniteautomation.

the class DataPointDao method createValueConverterMap.

@Override
protected Map<String, Function<Object, Object>> createValueConverterMap() {
    Map<String, Function<Object, Object>> converters = super.createValueConverterMap();
    Map<String, Function<Object, Object>> myConverters = new HashMap<>();
    myConverters.put("dataTypeId", value -> {
        if (value instanceof String) {
            DataType type = DataType.fromName((String) value);
            return type == null ? null : type.getId();
        }
        return value;
    });
    return combine(converters, myConverters);
}
Also used : Function(java.util.function.Function) HashMap(java.util.HashMap) DataType(com.serotonin.m2m2.DataType)

Example 17 with DataType

use of ucar.ma2.DataType in project imageio-ext by geosolutions-it.

the class NetCDFUtilities method isVariableAccepted.

/**
 * NetCDF files may contains a wide set of variables. Some of them are
 * unuseful for our purposes. The method returns {@code true} if the
 * specified variable is accepted.
 */
public static boolean isVariableAccepted(final Variable var, final CheckType checkType) {
    if (var instanceof CoordinateAxis1D) {
        return false;
    } else if (checkType == CheckType.NOSCALARS) {
        List<Dimension> dimensions = var.getDimensions();
        if (dimensions.size() < 2) {
            return false;
        }
        DataType dataType = var.getDataType();
        if (dataType == DataType.CHAR) {
            return false;
        }
        return isVariableAccepted(var.getName(), CheckType.NONE);
    } else if (checkType == CheckType.ONLYGEOGRIDS) {
        List<Dimension> dimensions = var.getDimensions();
        if (dimensions.size() < 2) {
            return false;
        }
        for (Dimension dimension : dimensions) {
            String dimName = dimension.getName();
            // check the dimension to be defined
            Group group = dimension.getGroup();
            Variable dimVariable = group.findVariable(dimName);
            if (dimVariable == null) {
                return false;
            }
            if (dimVariable instanceof CoordinateAxis1D) {
                CoordinateAxis1D axis = (CoordinateAxis1D) dimVariable;
                AxisType axisType = axis.getAxisType();
                if (axisType == null) {
                    return false;
                }
            }
        }
        DataType dataType = var.getDataType();
        if (dataType == DataType.CHAR) {
            return false;
        }
        return isVariableAccepted(var.getName(), CheckType.NONE);
    } else
        return isVariableAccepted(var.getName(), checkType);
}
Also used : Group(ucar.nc2.Group) Variable(ucar.nc2.Variable) DataType(ucar.ma2.DataType) List(java.util.List) AxisType(ucar.nc2.constants.AxisType) CoordinateAxis1D(ucar.nc2.dataset.CoordinateAxis1D) Dimension(ucar.nc2.Dimension)

Example 18 with DataType

use of ucar.ma2.DataType in project imageio-ext by geosolutions-it.

the class INGVConverter method run.

private void run(String fileNameIn, String fileNameOut) {
    try {
        final File fileIn = new File(fileNameIn);
        final NetcdfFile ncFileIn = NetcdfFile.open(fileNameIn);
        final File fileOut = new File(fileNameOut);
        // keep original name
        final File outputFile = File.createTempFile(fileIn.getName(), ".tmp");
        final NetcdfFileWriteable ncFileOut = NetcdfFileWriteable.createNew(outputFile.getAbsolutePath());
        boolean hasDepth = false;
        // input dimensions
        String timeName = "time_counter";
        Dimension timeOriginalDim = ncFileIn.findDimension(timeName);
        if (timeOriginalDim == null) {
            timeOriginalDim = ncFileIn.findDimension("time");
            timeName = "time";
        }
        final Dimension yDim = ncFileIn.findDimension("y");
        final Dimension xDim = ncFileIn.findDimension("x");
        // input VARIABLES
        final Variable timeOriginalVar = ncFileIn.findVariable(timeName);
        final Array timeOriginalData = timeOriginalVar.read();
        final DataType timeDataType = timeOriginalVar.getDataType();
        final Variable navLat = ncFileIn.findVariable(NAV_LAT);
        final DataType navLatDataType = navLat.getDataType();
        final Variable navLon = ncFileIn.findVariable(NAV_LON);
        final DataType navLonDataType = navLon.getDataType();
        final int nLat = yDim.getLength();
        final int nLon = xDim.getLength();
        final int nTimes = timeOriginalDim.getLength();
        final Array latOriginalData = navLat.read("0:" + (nLat - 1) + ":1, 0:0:1").reduce();
        final Array lonOriginalData = navLon.read("0:0:1, 0:" + (nLon - 1) + ":1").reduce();
        // //
        // 
        // Depth related vars
        // 
        // //
        Array depthOriginalData = null;
        DataType depthDataType = null;
        int nDepths = 0;
        Array depthDestData = null;
        Dimension depthDim = null;
        String depthName = "depth";
        Variable depthOriginalVar = null;
        int dName = 0;
        while (depthOriginalVar == null) {
            if (dName == depthNames.length)
                break;
            String name = depthNames[dName++];
            // Depth
            depthOriginalVar = ncFileIn.findVariable(name);
        }
        if (depthOriginalVar != null) {
            depthName = depthNames[dName - 1];
            nDepths = depthOriginalVar.getDimension(0).getLength();
            depthOriginalData = depthOriginalVar.read();
            hasDepth = true;
        }
        Dimension timeDim = ncFileOut.addDimension("time", nTimes);
        Dimension latDim = ncFileOut.addDimension(NetCDFUtilities.LAT, nLat);
        Dimension lonDim = ncFileOut.addDimension(NetCDFUtilities.LON, nLon);
        if (hasDepth)
            depthDim = ncFileOut.addDimension(NetCDFUtilities.DEPTH, nDepths);
        // writing file
        NetCDFConverterUtilities.copyGlobalAttributes(ncFileOut, ncFileIn.getGlobalAttributes());
        // //
        // 
        // Time requires a special Management
        // 
        // //
        // time Variable
        Variable timeVar = ncFileOut.addVariable(NetCDFUtilities.TIME, timeDataType, new Dimension[] { timeDim });
        NetCDFConverterUtilities.setVariableAttributes(timeOriginalVar, ncFileOut, NetCDFUtilities.TIME);
        // Dimensions
        ncFileOut.addVariable(NetCDFUtilities.LAT, navLatDataType, new Dimension[] { latDim });
        NetCDFConverterUtilities.setVariableAttributes(navLat, ncFileOut, NetCDFUtilities.LAT);
        ncFileOut.addVariable(NetCDFUtilities.LON, navLonDataType, new Dimension[] { lonDim });
        NetCDFConverterUtilities.setVariableAttributes(navLon, ncFileOut, NetCDFUtilities.LON);
        Array lat1Data = NetCDFConverterUtilities.getArray(nLat, navLatDataType);
        NetCDFConverterUtilities.setData1D(latOriginalData, lat1Data, navLatDataType, nLat, true);
        // lon Variable
        Array lon1Data = NetCDFConverterUtilities.getArray(nLon, navLonDataType);
        NetCDFConverterUtilities.setData1D(lonOriginalData, lon1Data, navLonDataType, nLon, false);
        if (hasDepth) {
            depthDataType = depthOriginalVar.getDataType();
            ncFileOut.addVariable(NetCDFUtilities.DEPTH, depthDataType, new Dimension[] { depthDim });
            NetCDFConverterUtilities.setVariableAttributes(depthOriginalVar, ncFileOut, NetCDFUtilities.DEPTH);
        }
        if (hasDepth) {
            // depth level Variable
            depthDestData = NetCDFConverterUtilities.getArray(nDepths, depthDataType);
            NetCDFConverterUtilities.setData1D(depthOriginalData, depthDestData, depthDataType, nDepths, false);
        }
        // {} Variables
        final ArrayList<String> variables = new ArrayList<String>(5);
        final HashMap<String, String> updatingValidRange = new HashMap<String, String>(5);
        final HashMap<String, String> updatingFilLValue = new HashMap<String, String>(5);
        int numVars = 0;
        for (int i = 0; i < NUMVARS; i++) {
            String varName = (String) VARIABLES.get(i);
            Variable var = ncFileIn.findVariable(varName);
            if (var != null) {
                variables.add(varName);
                boolean hasLocalDepth = NetCDFConverterUtilities.hasThisDimension(var, depthName);
                if (hasDepth && hasLocalDepth)
                    ncFileOut.addVariable(varName, var.getDataType(), new Dimension[] { timeDim, depthDim, latDim, lonDim });
                else
                    ncFileOut.addVariable(varName, var.getDataType(), new Dimension[] { timeDim, latDim, lonDim });
                // //
                // 
                // Check for updating valid range
                // 
                // //
                boolean hasMinMax = false;
                Attribute validMax = var.findAttribute(NetCDFUtilities.DatasetAttribs.VALID_MAX);
                Attribute validMin = var.findAttribute(NetCDFUtilities.DatasetAttribs.VALID_MIN);
                Attribute fillValue = var.findAttribute(NetCDFUtilities.DatasetAttribs.FILL_VALUE);
                boolean hasMissingValue = false;
                boolean hasFillValue = true;
                if (fillValue == null) {
                    hasFillValue = false;
                    fillValue = var.findAttribute(NetCDFUtilities.DatasetAttribs.MISSING_VALUE);
                    if (fillValue != null)
                        hasMissingValue = true;
                }
                Attribute validRange = var.findAttribute(NetCDFUtilities.DatasetAttribs.VALID_RANGE);
                boolean hasValidRange = false;
                boolean rewriteAttribute = false;
                if (validMin != null && validMax != null && fillValue != null) {
                    rewriteAttribute = !NetCDFConverterUtilities.isFillValueOutsideValidRange(validMax, validMin, fillValue, var.getDataType());
                    hasMinMax = true;
                } else if (validRange != null && fillValue != null) {
                    rewriteAttribute = !NetCDFConverterUtilities.isFillValueOutsideValidRange(validRange, fillValue, var.getDataType());
                    hasValidRange = true;
                } else {
                    rewriteAttribute = true;
                }
                if (rewriteAttribute) {
                    updatingValidRange.put(varName, "");
                    DataType varDatatype = var.getDataType();
                    Array range = NetCDFConverterUtilities.getRangeArray(varDatatype);
                    ncFileOut.addVariableAttribute(varName, NetCDFUtilities.DatasetAttribs.VALID_RANGE, range);
                    if (hasMissingValue && !hasFillValue) {
                        updatingFilLValue.put(varName, "");
                        Number fillVal = NetCDFConverterUtilities.getNumber(varDatatype);
                        ncFileOut.addVariableAttribute(varName, NetCDFUtilities.DatasetAttribs.FILL_VALUE, fillVal);
                    }
                }
                String[] exceptions = null;
                if (hasMinMax) {
                    if (hasMissingValue)
                        exceptions = new String[] { NetCDFUtilities.DatasetAttribs.VALID_MAX, NetCDFUtilities.DatasetAttribs.VALID_MIN, NetCDFUtilities.DatasetAttribs.MISSING_VALUE };
                    else
                        exceptions = new String[] { NetCDFUtilities.DatasetAttribs.VALID_MAX, NetCDFUtilities.DatasetAttribs.VALID_MIN };
                } else if (hasValidRange) {
                    if (hasMissingValue)
                        exceptions = new String[] { NetCDFUtilities.DatasetAttribs.VALID_RANGE, NetCDFUtilities.DatasetAttribs.MISSING_VALUE };
                    else
                        exceptions = new String[] { NetCDFUtilities.DatasetAttribs.VALID_RANGE };
                } else if (hasMissingValue)
                    exceptions = new String[] { NetCDFUtilities.DatasetAttribs.MISSING_VALUE };
                NetCDFConverterUtilities.setVariableAttributes(var, ncFileOut, exceptions);
                numVars++;
            }
        }
        // writing bin data ...
        ncFileOut.create();
        Array timeData = NetCDFConverterUtilities.getArray(nTimes, timeDataType);
        NetCDFConverterUtilities.setData1D(timeOriginalData, timeData, timeDataType, nTimes, false);
        ncFileOut.write("time", timeData);
        timeVar = ncFileOut.findVariable("time");
        timeDim.addCoordinateVariable(timeVar);
        ncFileOut.write(NetCDFUtilities.LAT, lat1Data);
        ncFileOut.write(NetCDFUtilities.LON, lon1Data);
        if (hasDepth) {
            Variable depthVar = ncFileOut.findVariable("depth");
            depthDim.addCoordinateVariable(depthVar);
            ncFileOut.write(NetCDFUtilities.DEPTH, depthDestData);
        }
        for (int i = 0; i < numVars; i++) {
            String varName = (String) variables.get(i);
            Variable var = ncFileIn.findVariable(varName);
            final boolean hasLocalDepth = NetCDFConverterUtilities.hasThisDimension(var, depthName);
            Array originalVarArray = var.read();
            DataType varDataType = var.getDataType();
            Array destArray = null;
            int[] dimensions = null;
            final boolean setDepth = hasDepth && hasLocalDepth;
            if (setDepth) {
                dimensions = new int[] { timeDim.getLength(), depthDim.getLength(), latDim.getLength(), lonDim.getLength() };
            } else {
                dimensions = new int[] { timeDim.getLength(), latDim.getLength(), lonDim.getLength() };
            }
            destArray = NetCDFConverterUtilities.getArray(dimensions, varDataType);
            boolean findNewRange = updatingValidRange.containsKey(varName);
            boolean updateFillValue = updatingFilLValue.containsKey(varName);
            final int[] loopLengths;
            if (setDepth)
                loopLengths = new int[] { nTimes, nDepths, nLat, nLon };
            else
                loopLengths = new int[] { nTimes, nLat, nLon };
            NetCDFConverterUtilities.writeData(ncFileOut, varName, var, originalVarArray, destArray, findNewRange, updateFillValue, loopLengths, true);
        }
        ncFileOut.close();
        outputFile.renameTo(fileOut);
    } catch (Exception e) {
        // something bad happened
        if (NetCDFConverterUtilities.LOGGER.isLoggable(Level.INFO))
            NetCDFConverterUtilities.LOGGER.log(Level.INFO, e.getLocalizedMessage(), e);
    }
}
Also used : NetcdfFileWriteable(ucar.nc2.NetcdfFileWriteable) Variable(ucar.nc2.Variable) HashMap(java.util.HashMap) Attribute(ucar.nc2.Attribute) ArrayList(java.util.ArrayList) Dimension(ucar.nc2.Dimension) IOException(java.io.IOException) NetcdfFile(ucar.nc2.NetcdfFile) Array(ucar.ma2.Array) DataType(ucar.ma2.DataType) NetcdfFile(ucar.nc2.NetcdfFile) File(java.io.File)

Example 19 with DataType

use of ucar.ma2.DataType in project imageio-ext by geosolutions-it.

the class MercatorOceanConverter method run.

private void run(String fileNameIn, String fileNameOut) {
    try {
        final File fileIn = new File(fileNameIn);
        final NetcdfFile ncFileIn = NetcdfFile.open(fileNameIn);
        final File fileOut = new File(fileNameOut);
        // keep original name
        final File outputFile = File.createTempFile(fileIn.getName(), ".tmp");
        final NetcdfFileWriteable ncFileOut = NetcdfFileWriteable.createNew(outputFile.getAbsolutePath());
        // input dimensions
        final Dimension latOriginalDim = ncFileIn.findDimension(NetCDFUtilities.LATITUDE);
        final Dimension lonOriginalDim = ncFileIn.findDimension(NetCDFUtilities.LONGITUDE);
        // input VARIABLES
        // Variable time_0 = ncFileIn.findVariable("time");
        // Array time_0_Data = time_0.read();
        // Index time_0_Index = time_0_Data.getIndex();
        final Variable lonOriginalVar = ncFileIn.findVariable(NetCDFUtilities.LONGITUDE);
        final int nLon = lonOriginalDim.getLength();
        final Variable latOriginalVar = ncFileIn.findVariable(NetCDFUtilities.LATITUDE);
        final int nLat = latOriginalDim.getLength();
        final Array latOriginalData = latOriginalVar.read();
        final Index latOriginalIndex = latOriginalData.getIndex();
        final Array lonOriginalData = lonOriginalVar.read();
        final Index lonOriginalIndex = lonOriginalData.getIndex();
        final Variable depthOriginalVar = ncFileIn.findVariable(// Depth
        NetCDFUtilities.DEPTH);
        final int nLevels = depthOriginalVar.getDimension(0).getLength();
        final Array depthOriginalData = depthOriginalVar.read();
        // Dimension timeDim = ncFileOut.addDimension("time",
        // timeDim0.getLength());
        Dimension latDim = ncFileOut.addDimension(NetCDFUtilities.LAT, nLat);
        Dimension lonDim = ncFileOut.addDimension(NetCDFUtilities.LON, nLon);
        Dimension depthDim = ncFileOut.addDimension(NetCDFUtilities.DEPTH, nLevels);
        Dimension timeDim = ncFileOut.addDimension(NetCDFUtilities.TIME, 1);
        // writing file
        computeMatrixExtremes(latOriginalData, lonOriginalData, nLon, nLat, latOriginalIndex, lonOriginalIndex);
        NetCDFConverterUtilities.copyGlobalAttributes(ncFileOut, ncFileIn.getGlobalAttributes());
        // //
        // 
        // Time requires a special Management
        // 
        // //
        // time Variable
        Variable timeVar = ncFileOut.addVariable(NetCDFUtilities.TIME, DataType.FLOAT, new Dimension[] { timeDim });
        Attribute referenceTime = ncFileIn.findGlobalAttribute(TIME_ORIGIN);
        Attribute forecastDate = ncFileIn.findGlobalAttribute(FORECAST_DAY);
        int numDay = 0;
        if (referenceTime != null && forecastDate != null) {
            numDay = setTime(ncFileOut, referenceTime, forecastDate);
        }
        // final float referenceTime = setTimeVariableAttributes(timeVar,
        // ncFileOut);
        // lat Variable
        ArrayFloat latDestData = new ArrayFloat(new int[] { latOriginalDim.getLength() });
        Index latDestIndex = latDestData.getIndex();
        ncFileOut.addVariable(NetCDFUtilities.LAT, DataType.FLOAT, new Dimension[] { latDim });
        // NOTE: A Strange BUG (I guess)
        // when you copy attributes from old vars to new vars, it overwrite
        // coordvars!!!
        ncFileOut.addVariableAttribute(NetCDFUtilities.LAT, "long_name", NetCDFUtilities.LATITUDE);
        ncFileOut.addVariableAttribute(NetCDFUtilities.LAT, UNITS, latOriginalVar.getUnitsString());
        // new String[] { "long_name", UNITS, "step" , "axis"});
        for (int yPos = 0; yPos < latOriginalDim.getLength(); yPos++) {
            latDestData.setFloat(latDestIndex.set(yPos), new Float(this.ymax - (new Float(yPos).floatValue() * this.periodY)).floatValue());
        }
        // lon Variable
        ArrayFloat lonDestData = new ArrayFloat(new int[] { lonOriginalDim.getLength() });
        Index lonDestIndex = lonDestData.getIndex();
        ncFileOut.addVariable(NetCDFUtilities.LON, DataType.FLOAT, new Dimension[] { lonDim });
        ncFileOut.addVariableAttribute(NetCDFUtilities.LON, "long_name", NetCDFUtilities.LONGITUDE);
        ncFileOut.addVariableAttribute(NetCDFUtilities.LON, UNITS, lonOriginalVar.getUnitsString());
        // new String[] { "long_name", UNITS, "step", "axis"});
        for (int xPos = 0; xPos < lonOriginalDim.getLength(); xPos++) {
            lonDestData.setFloat(lonDestIndex.set(xPos), new Float(this.xmin + (new Float(xPos).floatValue() * this.periodX)).floatValue());
        }
        // depth level Variable
        ArrayFloat depthDestData = new ArrayFloat(new int[] { depthDim.getLength() });
        Index depthDestIndex = depthDestData.getIndex();
        ncFileOut.addVariable(NetCDFUtilities.DEPTH, DataType.FLOAT, new Dimension[] { depthDim });
        ncFileOut.addVariableAttribute(NetCDFUtilities.DEPTH, "long_name", NetCDFUtilities.DEPTH);
        ncFileOut.addVariableAttribute(NetCDFUtilities.DEPTH, UNITS, depthOriginalVar.getUnitsString());
        final Attribute positiveAttrib = depthOriginalVar.findAttribute("positive");
        String positiveValue = "down";
        if (positiveAttrib != null)
            positiveValue = positiveAttrib.getStringValue();
        ncFileOut.addVariableAttribute(NetCDFUtilities.DEPTH, "positive", positiveValue);
        for (int wPos = 0; wPos < depthDim.getLength(); wPos++) {
            depthDestData.setFloat(depthDestIndex.set(wPos), depthOriginalData.getFloat(depthDestIndex));
        }
        int numVars = 0;
        final ArrayList<String> variables = new ArrayList<String>(5);
        // {} Variables
        for (int i = 0; i < NUMVARS; i++) {
            String varName = (String) VARIABLES.get(i);
            Variable var = ncFileIn.findVariable(varName);
            if (var != null) {
                variables.add(varName);
                boolean hasLocalDepth = NetCDFConverterUtilities.hasThisDimension(var, "depth");
                if (hasLocalDepth)
                    ncFileOut.addVariable(varName, var.getDataType(), new Dimension[] { timeDim, depthDim, latDim, lonDim });
                else
                    ncFileOut.addVariable(varName, var.getDataType(), new Dimension[] { timeDim, latDim, lonDim });
                NetCDFConverterUtilities.setVariableAttributes(var, ncFileOut, new String[] { "positions" });
                numVars++;
            }
        }
        // writing bin data ...
        ncFileOut.create();
        ArrayFloat timeData = new ArrayFloat(new int[] { timeDim.getLength() });
        Index timeIndex = timeData.getIndex();
        timeData.setFloat(timeIndex.set(0), numDay);
        ncFileOut.write(NetCDFUtilities.TIME, timeData);
        timeDim.addCoordinateVariable(timeVar);
        Variable latitudeVar = ncFileOut.findVariable(NetCDFUtilities.LAT);
        latDim.addCoordinateVariable(latitudeVar);
        ncFileOut.write(NetCDFUtilities.LAT, latDestData);
        Variable longitudeVar = ncFileOut.findVariable(NetCDFUtilities.LON);
        lonDim.addCoordinateVariable(longitudeVar);
        ncFileOut.write(NetCDFUtilities.LON, lonDestData);
        Variable depthVar = ncFileOut.findVariable(NetCDFUtilities.DEPTH);
        depthDim.addCoordinateVariable(depthVar);
        ncFileOut.write(NetCDFUtilities.DEPTH, depthDestData);
        for (int i = 0; i < numVars; i++) {
            final String varName = (String) variables.get(i);
            final Variable var = ncFileIn.findVariable(varName);
            final boolean hasLocalDepth = NetCDFConverterUtilities.hasThisDimension(var, "depth");
            final Array originalData = var.read();
            Index varIndex = originalData.getIndex();
            final DataType varDataType = var.getDataType();
            final Attribute fv = var.findAttribute("_FillValue");
            float fillValue = Float.NaN;
            if (fv != null) {
                fillValue = (fv.getNumericValue()).floatValue();
            }
            Array destArray = null;
            int[] dimensions = null;
            if (hasLocalDepth) {
                dimensions = new int[] { timeDim.getLength(), depthDim.getLength(), nLat, nLon };
            } else {
                dimensions = new int[] { timeDim.getLength(), nLat, nLon };
            }
            destArray = NetCDFConverterUtilities.getArray(dimensions, varDataType);
            Index destIndex = destArray.getIndex();
            ArrayFloat tempData = new ArrayFloat(new int[] { latOriginalDim.getLength(), lonOriginalDim.getLength() });
            Index tempIndex = tempData.getIndex();
            if (hasLocalDepth) {
                for (int levelPos = 0; levelPos < depthDim.getLength(); levelPos++) {
                    for (int yPos = 0; yPos < latOriginalDim.getLength(); yPos++) {
                        for (int xPos = 0; xPos < lonOriginalDim.getLength(); xPos++) {
                            tempData.setFloat(tempIndex.set(yPos, xPos), originalData.getFloat(varIndex.set(levelPos, yPos, xPos)));
                        }
                    }
                    final WritableRaster outData = Resampler(latOriginalData, lonOriginalData, lonOriginalDim.getLength(), latOriginalDim.getLength(), 2, tempData, fillValue);
                    for (int j = 0; j < latOriginalDim.getLength(); j++) {
                        for (int k = 0; k < lonOriginalDim.getLength(); k++) {
                            float sample = outData.getSampleFloat(k, j, 0);
                            destArray.setFloat(destIndex.set(0, levelPos, j, k), sample);
                        }
                    }
                }
            } else {
                for (int yPos = 0; yPos < latOriginalDim.getLength(); yPos++) {
                    for (int xPos = 0; xPos < lonOriginalDim.getLength(); xPos++) {
                        tempData.setFloat(tempIndex.set(yPos, xPos), originalData.getFloat(varIndex.set(yPos, xPos)));
                    }
                }
                final WritableRaster outData = Resampler(latOriginalData, lonOriginalData, lonOriginalDim.getLength(), latOriginalDim.getLength(), 2, tempData, fillValue);
                for (int j = 0; j < latOriginalDim.getLength(); j++) {
                    for (int k = 0; k < lonOriginalDim.getLength(); k++) {
                        float sample = outData.getSampleFloat(k, j, 0);
                        destArray.setFloat(destIndex.set(0, j, k), sample);
                    }
                }
            }
            // }
            ncFileOut.write(varName, destArray);
        }
        ncFileOut.close();
        outputFile.renameTo(fileOut);
    } catch (Exception e) {
        // something bad happened
        if (LOGGER.isLoggable(Level.INFO))
            LOGGER.log(Level.INFO, e.getLocalizedMessage(), e);
        JAI.getDefaultInstance().getTileCache().flush();
    }
}
Also used : NetcdfFileWriteable(ucar.nc2.NetcdfFileWriteable) Variable(ucar.nc2.Variable) Attribute(ucar.nc2.Attribute) ArrayList(java.util.ArrayList) Index(ucar.ma2.Index) ArrayFloat(ucar.ma2.ArrayFloat) Dimension(ucar.nc2.Dimension) ParseException(java.text.ParseException) IOException(java.io.IOException) NetcdfFile(ucar.nc2.NetcdfFile) Array(ucar.ma2.Array) ArrayFloat(ucar.ma2.ArrayFloat) WritableRaster(java.awt.image.WritableRaster) DataType(ucar.ma2.DataType) File(java.io.File) NetcdfFile(ucar.nc2.NetcdfFile)

Example 20 with DataType

use of ucar.ma2.DataType in project imageio-ext by geosolutions-it.

the class NetCDFConverterUtilities method getRangeArray.

public static Array getRangeArray(DataType varDataType) {
    int[] dim = new int[] { 2 };
    if (varDataType == DataType.FLOAT) {
        Array array = new ArrayFloat(dim);
        Index index = array.getIndex();
        array.setFloat(index.set(0), Float.MIN_VALUE);
        array.setFloat(index.set(1), Float.MAX_VALUE);
        return array;
    } else if (varDataType == DataType.DOUBLE) {
        Array array = new ArrayDouble(dim);
        Index index = array.getIndex();
        array.setDouble(index.set(0), Double.MIN_VALUE);
        array.setDouble(index.set(1), Double.MAX_VALUE);
        return array;
    } else if (varDataType == DataType.BYTE) {
        Array array = new ArrayByte(dim);
        Index index = array.getIndex();
        array.setByte(index.set(0), Byte.MIN_VALUE);
        array.setByte(index.set(1), Byte.MAX_VALUE);
        return array;
    } else if (varDataType == DataType.SHORT) {
        Array array = new ArrayShort(dim);
        Index index = array.getIndex();
        array.setShort(index.set(0), Short.MIN_VALUE);
        array.setShort(index.set(1), Short.MAX_VALUE);
        return array;
    } else if (varDataType == DataType.INT) {
        Array array = new ArrayInt(dim);
        Index index = array.getIndex();
        array.setInt(index.set(0), Integer.MIN_VALUE);
        array.setInt(index.set(1), Integer.MAX_VALUE);
        return array;
    }
    throw new IllegalArgumentException("Actually unsupported Datatype");
}
Also used : Array(ucar.ma2.Array) ArrayDouble(ucar.ma2.ArrayDouble) ArrayFloat(ucar.ma2.ArrayFloat) Index(ucar.ma2.Index) ArrayByte(ucar.ma2.ArrayByte) ArrayInt(ucar.ma2.ArrayInt) ArrayShort(ucar.ma2.ArrayShort)

Aggregations

Array (ucar.ma2.Array)9 DataType (ucar.ma2.DataType)8 DataType (com.serotonin.m2m2.DataType)7 ArrayList (java.util.ArrayList)7 Index (ucar.ma2.Index)7 IOException (java.io.IOException)6 HashMap (java.util.HashMap)6 Variable (ucar.nc2.Variable)6 ArrayFloat (ucar.ma2.ArrayFloat)5 Attribute (ucar.nc2.Attribute)5 Dimension (ucar.nc2.Dimension)5 DataValue (com.serotonin.m2m2.rt.dataImage.types.DataValue)4 File (java.io.File)4 NetcdfFile (ucar.nc2.NetcdfFile)4 NetcdfFileWriteable (ucar.nc2.NetcdfFileWriteable)4 PointValueTime (com.serotonin.m2m2.rt.dataImage.PointValueTime)3 CorruptDataException (com.ibm.j9ddr.CorruptDataException)2 GeneratedFieldAccessor (com.ibm.j9ddr.GeneratedFieldAccessor)2 GeneratedPointerClass (com.ibm.j9ddr.GeneratedPointerClass)2 DataType (com.ibm.j9ddr.vm29.j9.DataType)2