Examples with IndexFamily uk.ac.bbsrc.tgac.miso.core.data.IndexFamily used on opensource projects

Example 1 with IndexFamily

use of uk.ac.bbsrc.tgac.miso.core.data.IndexFamily in project miso-lims by miso-lims.

the class IndexCheckerTest method makeIndex.

public Index makeIndex(String fakeSequence, String realSequences) {
    Index index = new Index();
    IndexFamily family = new IndexFamily();
    family.setFake(realSequences != null);
    index.setFamily(family);
    index.setName(fakeSequence + " name");
    index.setSequence(fakeSequence);
    index.setRealSequences(realSequences);
    return index;
}

Example 2 with IndexFamily

use of uk.ac.bbsrc.tgac.miso.core.data.IndexFamily in project miso-lims by miso-lims.

the class IndexFamilyController method create.

@GetMapping("/new")
public ModelAndView create(ModelMap model) throws IOException {
    model.put("title", "New Index Family");
    model.put(PageMode.PROPERTY, PageMode.CREATE.getLabel());
    return indexFamilyPage(new IndexFamily(), model);
}

Example 3 with IndexFamily

use of uk.ac.bbsrc.tgac.miso.core.data.IndexFamily in project miso-lims by miso-lims.

the class IndexFamilyController method edit.

@GetMapping("/{id}")
public ModelAndView edit(@PathVariable long id, ModelMap model) throws IOException {
    IndexFamily family = indexFamilyService.get(id);
    if (family == null) {
        throw new NotFoundException("No index family found for ID: " + id);
    }
    model.put("title", "Index Family " + id);
    model.put(PageMode.PROPERTY, PageMode.EDIT.getLabel());
    return indexFamilyPage(family, model);
}

Example 4 with IndexFamily

use of uk.ac.bbsrc.tgac.miso.core.data.IndexFamily in project miso-lims by miso-lims.

the class HibernateIndexDaoIT method testGetByFamilyPositionAndName.

@Test
public void testGetByFamilyPositionAndName() throws Exception {
    IndexFamily family = (IndexFamily) currentSession().get(IndexFamily.class, 3L);
    int position = 1;
    String name = "N710";
    Index index = dao.getByFamilyPositionAndName(family, position, name);
    assertNotNull(index);
    assertEquals(family.getId(), index.getFamily().getId());
    assertEquals(position, index.getPosition());
    assertEquals(name, index.getName());
}

Example 5 with IndexFamily

use of uk.ac.bbsrc.tgac.miso.core.data.IndexFamily in project miso-lims by miso-lims.

the class HibernateIndexFamilyDaoIT method testUpdate.

@Test
public void testUpdate() throws IOException {
    long id = 1L;
    String name = "New Name";
    IndexFamily fam = (IndexFamily) getSessionFactory().getCurrentSession().get(IndexFamily.class, id);
    assertNotEquals(name, fam.getName());
    fam.setName(name);
    sut.update(fam);
    clearSession();
    IndexFamily saved = (IndexFamily) getSessionFactory().getCurrentSession().get(IndexFamily.class, id);
    assertEquals(name, saved.getName());
}