Examples with InstrumentDataManglingPolicy uk.ac.bbsrc.tgac.miso.core.data.InstrumentDataManglingPolicy used on opensource projects

Example 1 with InstrumentDataManglingPolicy

use of uk.ac.bbsrc.tgac.miso.core.data.InstrumentDataManglingPolicy in project miso-lims by miso-lims.

the class Dtos method to.

public static Run to(@Nonnull RunDto dto) {
    Run to = getPlatformRun(dto);
    setLong(to::setId, dto.getId(), false);
    setString(to::setName, dto.getName());
    setString(to::setAlias, dto.getAlias());
    setString(to::setDescription, dto.getDescription());
    setObject(to::setHealth, dto.getStatus(), status -> HealthType.get(status));
    setString(to::setAccession, dto.getAccession());
    setObject(to::setSequencer, InstrumentImpl::new, dto.getInstrumentId());
    setDate(to::setStartDate, dto.getStartDate());
    setDate(to::setCompletionDate, dto.getEndDate());
    setObject(to::setSequencingParameters, SequencingParameters::new, dto.getSequencingParametersId());
    setObject(to::setSequencingKit, KitDescriptor::new, dto.getSequencingKitId());
    setString(to::setSequencingKitLot, dto.getSequencingKitLot());
    setString(to::setFilePath, dto.getRunPath());
    setBoolean(to::setQcPassed, dto.getQcPassed(), true);
    setBoolean(to::setDataReview, dto.getDataReview(), true);
    setObject(to::setSop, Sop::new, dto.getSopId());
    setObject(to::setDataManglingPolicy, dto.getDataManglingPolicy(), InstrumentDataManglingPolicy::valueOf);
    return to;
}

Example 2 with InstrumentDataManglingPolicy

use of uk.ac.bbsrc.tgac.miso.core.data.InstrumentDataManglingPolicy in project miso-lims by miso-lims.

the class ConstantsController method addDataManglingPolicies.

private static void addDataManglingPolicies(ObjectNode node) {
    ArrayNode dataManglingPolicies = node.putArray("dataManglingPolicies");
    for (InstrumentDataManglingPolicy policy : InstrumentDataManglingPolicy.values()) {
        ObjectNode dto = dataManglingPolicies.addObject();
        dto.put("label", policy.getLabel());
        dto.put("value", policy.name());
    }
}