Examples with RunPartitionAliquotId uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId used on opensource projects

Example 1 with RunPartitionAliquotId

use of uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId in project miso-lims by miso-lims.

the class HibernateRunPartitionAliquotDaoIT method testCreate.

@Test
public void testCreate() throws Exception {
    Run run = (Run) currentSession().get(Run.class, 1L);
    Partition partition = (Partition) currentSession().get(PartitionImpl.class, 2L);
    LibraryAliquot aliquot = (LibraryAliquot) currentSession().get(LibraryAliquot.class, 3L);
    RunPartitionAliquotId id = new RunPartitionAliquotId(run, partition, aliquot);
    assertNull(currentSession().get(RunPartitionAliquot.class, id));
    RunPartitionAliquot rpa = new RunPartitionAliquot(run, partition, aliquot);
    User user = (User) currentSession().get(UserImpl.class, 1L);
    rpa.setLastModifier(user);
    RunLibraryQcStatus qc = (RunLibraryQcStatus) currentSession().get(RunLibraryQcStatus.class, 1L);
    rpa.setQcStatus(qc);
    rpa.setQcUser(user);
    rpa.setQcDate(new Date());
    sut.create(rpa);
    clearSession();
    RunPartitionAliquot saved = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    assertNotNull(saved);
    assertEquals(1L, saved.getRun().getId());
    assertEquals(2L, saved.getPartition().getId());
    assertEquals(3L, saved.getAliquot().getId());
}

Example 2 with RunPartitionAliquotId

use of uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId in project miso-lims by miso-lims.

the class HibernateRunPartitionAliquotDaoIT method testSaveCreate.

@Test
public void testSaveCreate() throws Exception {
    Run run = (Run) currentSession().get(Run.class, 1L);
    Partition partition = (Partition) currentSession().get(PartitionImpl.class, 2L);
    LibraryAliquot aliquot = (LibraryAliquot) currentSession().get(LibraryAliquot.class, 3L);
    RunPartitionAliquotId id = new RunPartitionAliquotId(run, partition, aliquot);
    assertNull(currentSession().get(RunPartitionAliquot.class, id));
    RunPartitionAliquot rpa = new RunPartitionAliquot(run, partition, aliquot);
    User user = (User) currentSession().get(UserImpl.class, 1L);
    rpa.setLastModifier(user);
    RunLibraryQcStatus qc = (RunLibraryQcStatus) currentSession().get(RunLibraryQcStatus.class, 1L);
    rpa.setQcStatus(qc);
    rpa.setQcUser(user);
    rpa.setQcDate(new Date());
    sut.save(rpa);
    clearSession();
    RunPartitionAliquot saved = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    assertNotNull(saved);
    assertEquals(1L, saved.getRun().getId());
    assertEquals(2L, saved.getPartition().getId());
    assertEquals(3L, saved.getAliquot().getId());
}

Example 3 with RunPartitionAliquotId

use of uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId in project miso-lims by miso-lims.

the class HibernateRunPartitionAliquotDaoIT method get.

private RunPartitionAliquot get(long runId, long partitionId, long aliquotId, boolean expectExisting) throws IOException {
    Run run = (Run) currentSession().get(Run.class, runId);
    Partition partition = (Partition) currentSession().get(PartitionImpl.class, partitionId);
    LibraryAliquot aliquot = (LibraryAliquot) currentSession().get(LibraryAliquot.class, aliquotId);
    RunPartitionAliquotId id = new RunPartitionAliquotId(run, partition, aliquot);
    RunPartitionAliquot existing = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    if (expectExisting) {
        assertNotNull(existing);
    } else {
        assertNull(existing);
    }
    return sut.get(run, partition, aliquot);
}

Example 4 with RunPartitionAliquotId

use of uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId in project miso-lims by miso-lims.

the class HibernateRunPartitionAliquotDaoIT method testSaveUpdate.

@Test
public void testSaveUpdate() throws Exception {
    Run run = (Run) currentSession().get(Run.class, 1L);
    Partition partition = (Partition) currentSession().get(PartitionImpl.class, 1L);
    LibraryAliquot aliquot = (LibraryAliquot) currentSession().get(LibraryAliquot.class, 1L);
    RunPartitionAliquotId id = new RunPartitionAliquotId(run, partition, aliquot);
    RunPartitionAliquot existing = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    assertNotNull(existing);
    assertNull(existing.getPurpose());
    RunPurpose purpose = (RunPurpose) currentSession().get(RunPurpose.class, 1L);
    assertNull(existing.getPurpose());
    existing.setPurpose(purpose);
    sut.save(existing);
    clearSession();
    RunPartitionAliquot saved = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    assertNotNull(saved.getPurpose());
    assertEquals(purpose.getId(), saved.getPurpose().getId());
}

Example 5 with RunPartitionAliquotId

use of uk.ac.bbsrc.tgac.miso.core.data.RunPartitionAliquot.RunPartitionAliquotId in project miso-lims by miso-lims.

the class HibernateRunPartitionAliquotDao method get.

@Override
public RunPartitionAliquot get(Run run, Partition partition, LibraryAliquot aliquot) throws IOException {
    RunPartitionAliquotId id = new RunPartitionAliquotId();
    id.setRun(run);
    id.setPartition(partition);
    id.setAliquot(aliquot);
    RunPartitionAliquot result = (RunPartitionAliquot) currentSession().get(RunPartitionAliquot.class, id);
    if (result == null) {
        // ensure the relationship exists before constructing the entity
        List<Object[]> ids = queryIds("WHERE r.runId = ? AND part.partitionId = ? AND pla.aliquotId = ?", new long[] { run.getId(), partition.getId(), aliquot.getId() });
        if (ids.isEmpty()) {
            return null;
        }
        result = new RunPartitionAliquot(run, partition, aliquot);
    }
    return result;
}