Examples with SampleSingleCell uk.ac.bbsrc.tgac.miso.core.data.SampleSingleCell used on opensource projects

Example 1 with SampleSingleCell

use of uk.ac.bbsrc.tgac.miso.core.data.SampleSingleCell in project miso-lims by miso-lims.

the class AbstractBulkSampleIT method assertAllForSingleCellAliquot.

protected void assertAllForSingleCellAliquot(Map<String, String> aliquot, Long sampleId, boolean newlyCreated) {
    SampleAliquotSingleCell target = (SampleAliquotSingleCell) getSession().get(SampleAliquotSingleCellImpl.class, sampleId);
    assertPlainSampleAttributes(aliquot, target, newlyCreated);
    assertDetailedSampleAttributes(aliquot, target);
    assertAnalyteAttributes(aliquot, target);
    assertAliquotAttributes(aliquot, target);
    assertSingleCellAliquotAttributes(aliquot, target);
    if (newlyCreated) {
        SampleStockSingleCell stockParent = LimsUtils.getParent(SampleStockSingleCell.class, target);
        assertSingleCellStockAttributes(aliquot, stockParent);
        SampleSingleCell singleCellParent = LimsUtils.getParent(SampleSingleCell.class, target);
        assertSingleCellAttributes(aliquot, singleCellParent);
        SampleTissue tissueParent = LimsUtils.getParent(SampleTissue.class, target);
        assertTissueAttributes(aliquot, tissueParent);
    }
}

Example 2 with SampleSingleCell

use of uk.ac.bbsrc.tgac.miso.core.data.SampleSingleCell in project miso-lims by miso-lims.

the class AbstractBulkSampleIT method assertAllForSingleCell.

protected void assertAllForSingleCell(Map<String, String> singleCell, long sampleId, boolean newlyCreated) {
    SampleSingleCell target = (SampleSingleCell) getSession().get(SampleSingleCellImpl.class, sampleId);
    assertPlainSampleAttributes(singleCell, target, newlyCreated);
    assertDetailedSampleAttributes(singleCell, target);
    assertSingleCellAttributes(singleCell, target);
    if (newlyCreated) {
        SampleTissue tissueParent = LimsUtils.getParent(SampleTissue.class, target);
        assertTissueAttributes(singleCell, tissueParent);
    }
}

Example 3 with SampleSingleCell

use of uk.ac.bbsrc.tgac.miso.core.data.SampleSingleCell in project miso-lims by miso-lims.

the class AbstractBulkSampleIT method assertAllForSingleCellStock.

protected void assertAllForSingleCellStock(Map<String, String> stock, Long sampleId, boolean newlyCreated) {
    SampleStockSingleCell target = (SampleStockSingleCell) getSession().get(SampleStockSingleCellImpl.class, sampleId);
    assertPlainSampleAttributes(stock, target, newlyCreated);
    assertDetailedSampleAttributes(stock, target);
    assertStockAttributes(stock, target);
    assertAnalyteAttributes(stock, target);
    assertSingleCellStockAttributes(stock, target);
    if (newlyCreated) {
        SampleTissue tissueParent = LimsUtils.getParent(SampleTissue.class, target);
        assertTissueAttributes(stock, tissueParent);
        SampleSingleCell singleCellParent = LimsUtils.getParent(SampleSingleCell.class, target);
        assertSingleCellAttributes(stock, singleCellParent);
        SampleIdentity identityAncestor = LimsUtils.getParent(SampleIdentity.class, target);
        assertIdentityAttributes(stock, identityAncestor);
    }
}

Example 4 with SampleSingleCell

use of uk.ac.bbsrc.tgac.miso.core.data.SampleSingleCell in project miso-lims by miso-lims.

the class Dtos method toSingleCellSample.

private static SampleSingleCell toSingleCellSample(@Nonnull SampleSingleCellRelative from) {
    SampleSingleCell to = new SampleSingleCellImpl();
    setBigDecimal(to::setInitialCellConcentration, from.getInitialCellConcentration());
    setString(to::setDigestion, from.getDigestion());
    return to;
}