Examples with ScientificName uk.ac.bbsrc.tgac.miso.core.data.ScientificName used on opensource projects

Example 1 with ScientificName

use of uk.ac.bbsrc.tgac.miso.core.data.ScientificName in project miso-lims by miso-lims.

the class DefaultSampleServiceTest method mockScientificName.

private ScientificName mockScientificName(long id, String alias) throws IOException {
    ScientificName sn = new ScientificName();
    sn.setId(id);
    sn.setAlias(alias);
    Mockito.when(scientificNameService.get(id)).thenReturn(sn);
    return sn;
}

Example 2 with ScientificName

use of uk.ac.bbsrc.tgac.miso.core.data.ScientificName in project miso-lims by miso-lims.

the class DefaultSampleServiceTest method makeUnsavedChildTissue.

private SampleTissue makeUnsavedChildTissue() throws IOException {
    SampleTissue sample = makeUnsavedParentTissue();
    sample.setSampleType("type");
    ScientificName sn = mockScientificName(1L, "scientific");
    sample.setScientificName(sn);
    mockShellProjectWithRealLookup(sample);
    return sample;
}

Example 3 with ScientificName

use of uk.ac.bbsrc.tgac.miso.core.data.ScientificName in project miso-lims by miso-lims.

the class Dtos method to.

public static ReferenceGenome to(@Nonnull ReferenceGenomeDto from) {
    ReferenceGenome to = new ReferenceGenomeImpl();
    setLong(to::setId, from.getId(), false);
    setString(to::setAlias, from.getAlias());
    setObject(to::setDefaultScientificName, ScientificName::new, from.getDefaultScientificNameId());
    return to;
}

Example 4 with ScientificName

use of uk.ac.bbsrc.tgac.miso.core.data.ScientificName in project miso-lims by miso-lims.

the class Dtos method to.

public static ScientificName to(@Nonnull ScientificNameDto from) {
    ScientificName to = new ScientificName();
    setLong(to::setId, from.getId(), false);
    setString(to::setAlias, from.getAlias());
    return to;
}

Example 5 with ScientificName

use of uk.ac.bbsrc.tgac.miso.core.data.ScientificName in project miso-lims by miso-lims.

the class HibernateScientificNameDaoIT method getCreateItem.

@Override
public ScientificName getCreateItem() {
    ScientificName item = new ScientificName();
    item.setAlias("New Sci Name");
    return item;
}