Examples with Study uk.ac.bbsrc.tgac.miso.core.data.Study used on opensource projects

Example 1 with Study

use of uk.ac.bbsrc.tgac.miso.core.data.Study in project miso-lims by miso-lims.

the class DefaultStudyService method update.

@Override
public long update(Study study) throws IOException {
    Study original = studyStore.get(study.getId());
    validateChange(study, original);
    original.setAccession(study.getAccession());
    original.setAlias(study.getAlias());
    original.setDescription(study.getDescription());
    original.setChangeDetails(authorizationManager.getCurrentUser());
    // project is immutable
    original.setStudyType(studyTypeDao.get(study.getStudyType().getId()));
    return studyStore.save(original);
}

Example 2 with Study

use of uk.ac.bbsrc.tgac.miso.core.data.Study in project miso-lims by miso-lims.

the class EditStudyController method newAssignedProject.

@GetMapping(value = "/new/{projectId}")
public ModelAndView newAssignedProject(@PathVariable long projectId, ModelMap model) throws IOException {
    Study study = new StudyImpl();
    Project project = projectService.get(projectId);
    if (project == null) {
        throw new NotFoundException("No project found with ID " + projectId);
    }
    study.setProject(project);
    return setupForm(study, model);
}

Example 3 with Study

use of uk.ac.bbsrc.tgac.miso.core.data.Study in project miso-lims by miso-lims.

the class HibernateStudyDao method listByProjectId.

@Override
public List<Study> listByProjectId(long projectId) throws IOException {
    Criteria criteria = currentSession().createCriteria(StudyImpl.class);
    criteria.createAlias("project", "project");
    criteria.add(Restrictions.eq("project.id", projectId));
    @SuppressWarnings("unchecked") List<Study> results = criteria.list();
    return results;
}

Example 4 with Study

use of uk.ac.bbsrc.tgac.miso.core.data.Study in project miso-lims by miso-lims.

the class HibernateStudyDaoIT method testSaveNew.

@Test
public void testSaveNew() throws IOException, MisoNamingException {
    Study newStudy = makeStudy();
    long id = dao.save(newStudy);
    Study savedRun = dao.get(id);
    assertEquals(newStudy.getAlias(), savedRun.getAlias());
}

Example 5 with Study

use of uk.ac.bbsrc.tgac.miso.core.data.Study in project miso-lims by miso-lims.

the class Dtos method to.

public static Study to(@Nonnull StudyDto dto) {
    Study to = new StudyImpl();
    setLong(to::setId, dto.getId(), false);
    setString(to::setAccession, dto.getAccession());
    setString(to::setAlias, dto.getAlias());
    setString(to::setDescription, dto.getDescription());
    setString(to::setName, dto.getName());
    setObject(to::setProject, ProjectImpl::new, dto.getProjectId());
    setObject(to::setStudyType, StudyType::new, dto.getStudyTypeId());
    return to;
}