Examples with StudyType uk.ac.bbsrc.tgac.miso.core.data.StudyType used on opensource projects

Example 6 with StudyType

use of uk.ac.bbsrc.tgac.miso.core.data.StudyType in project miso-lims by miso-lims.

the class Dtos method to.

public static Study to(@Nonnull StudyDto dto) {
    Study to = new StudyImpl();
    setLong(to::setId, dto.getId(), false);
    setString(to::setAccession, dto.getAccession());
    setString(to::setAlias, dto.getAlias());
    setString(to::setDescription, dto.getDescription());
    setString(to::setName, dto.getName());
    setObject(to::setProject, ProjectImpl::new, dto.getProjectId());
    setObject(to::setStudyType, StudyType::new, dto.getStudyTypeId());
    return to;
}

Example 7 with StudyType

use of uk.ac.bbsrc.tgac.miso.core.data.StudyType in project miso-lims by miso-lims.

the class DefaultStudyServiceTest method testSaveStudy.

@Test
public void testSaveStudy() throws IOException {
    StudyType st = new StudyType();
    st.setId(2L);
    st.setName("Test");
    when(studyTypeDao.get(2L)).thenReturn(st);
    Study s = new StudyImpl();
    s.setId(1L);
    s.setName("a");
    s.setDescription("desc");
    s.setStudyType(st);
    Study db = new StudyImpl();
    db.setId(1L);
    db.setName("b");
    db.setDescription("mt");
    s.setStudyType(st);
    when(studyStore.get(1L)).thenReturn(db);
    when(studyStore.save(db)).thenReturn(1L);
    assertEquals(1L, sut.update(s));
    assertEquals(s.getDescription(), db.getDescription());
    assertNotEquals(s.getName(), db.getName());
}

Example 8 with StudyType

use of uk.ac.bbsrc.tgac.miso.core.data.StudyType in project miso-lims by miso-lims.

the class HibernateStudyDaoIT method makeStudy.

private Study makeStudy() {
    User user = new UserImpl();
    user.setId(1L);
    Project project = new ProjectImpl();
    project.setId(1L);
    StudyType studyType = new StudyType();
    studyType.setId(1L);
    Study s = new StudyImpl();
    s.setName("STU999");
    s.setStudyType(studyType);
    s.setDescription("foo");
    s.setProject(project);
    s.setChangeDetails(user);
    return s;
}