Examples with PoolImpl uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl used on opensource projects

Example 11 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class HibernateProgressDaoIT method makePoolProgressStep.

private PoolProgressStep makePoolProgressStep(long poolId, int stepNumber) {
    PoolProgressStep step = new PoolProgressStep();
    Pool pool = new PoolImpl();
    pool.setId(poolId);
    step.setInput(pool);
    step.setStepNumber(stepNumber);
    return step;
}

Example 12 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class Dtos method to.

public static PoolOrder to(@Nonnull PoolOrderDto from) {
    PoolOrder to = new PoolOrder();
    setLong(to::setId, from.getId(), false);
    setString(to::setAlias, from.getAlias());
    setString(to::setDescription, from.getDescription());
    setObject(to::setPurpose, RunPurpose::new, from.getPurposeId());
    setInteger(to::setPartitions, from.getPartitions(), true);
    setObject(to::setContainerModel, SequencingContainerModel::new, from.getContainerModelId());
    setObject(to::setParameters, SequencingParameters::new, from.getParametersId());
    setBoolean(to::setDraft, from.isDraft(), false);
    if (from.getOrderAliquots() != null) {
        to.setOrderLibraryAliquots(from.getOrderAliquots().stream().map(libDto -> {
            OrderLibraryAliquot lib = Dtos.to(libDto);
            lib.setPoolOrder(to);
            return lib;
        }).collect(Collectors.toSet()));
    }
    setObject(to::setPool, PoolImpl::new, from.getPoolId());
    setObject(to::setSequencingOrder, SequencingOrderImpl::new, from.getSequencingOrderId());
    return to;
}

Example 13 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class HibernatePoolDaoIT method testSaveEmptyWithNotes.

@Test
public void testSaveEmptyWithNotes() throws Exception {
    final Date creationDate = new Date();
    final PoolImpl saveMe = getATestPool(1, creationDate, true, 10);
    final long rtn = dao.save(saveMe);
    // check they're actually the same
    Pool freshPool = dao.get(rtn);
    compareFields(saveMe, freshPool);
}

Example 14 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class HibernatePoolDaoIT method testChangeLogFunctionality.

@Test
public void testChangeLogFunctionality() throws Exception {
    PoolImpl testPool = getATestPool(1, new Date(), false, 0);
    dao.save(testPool);
    testPool.setConcentration(new BigDecimal("5"));
    testPool.setName("Test Pool xxx");
    testPool.setIdentificationBarcode("Foob");
    testPool.setCreationTime(new Date());
    testPool.setPlatformType(PlatformType.IONTORRENT);
    testPool.setAlias("Alias changed");
    testPool.setDiscarded(true);
    testPool.setVolume(new BigDecimal("10"));
    testPool.setQcPassed(true);
    testPool.setDescription("Description changed");
    User user = new UserImpl();
    user.setId(1L);
    testPool.setLastModifier(user);
    dao.save(testPool);
}