Examples with PoolImpl uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl used on opensource projects

Example 1 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class LoadSequencerWorkflowTest method makePoolStep.

private PoolProgressStep makePoolStep(String alias, String name) {
    Pool pool = new PoolImpl();
    pool.setAlias(alias);
    pool.setName(name);
    PoolProgressStep step = new PoolProgressStep();
    step.setInput(pool);
    return step;
}

Example 2 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class TestWorkflowTest method makePoolStep.

private PoolProgressStep makePoolStep(String alias, String name) {
    PoolProgressStep step = new PoolProgressStep();
    Pool pool = new PoolImpl();
    pool.setAlias(alias);
    pool.setName(name);
    step.setInput(pool);
    return step;
}

Example 3 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class DefaultWorkflowManagerTest method makePoolProgressStep.

private PoolProgressStep makePoolProgressStep(long id) {
    Pool pool = new PoolImpl();
    pool.setId(id);
    PoolProgressStep step = new PoolProgressStep();
    step.setInput(pool);
    return step;
}

Example 4 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class Dtos method to.

public static Transfer to(@Nonnull TransferDto from) {
    Transfer to = new Transfer();
    setLong(to::setId, from.getId(), false);
    setString(to::setTransferRequestName, from.getTransferRequestName());
    setDateTime(to::setTransferTime, from.getTransferTime());
    setObject(to::setSenderLab, LabImpl::new, from.getSenderLabId());
    setObject(to::setSenderGroup, Group::new, from.getSenderGroupId());
    setString(to::setRecipient, from.getRecipient());
    setObject(to::setRecipientGroup, Group::new, from.getRecipientGroupId());
    addTransferItems(to::getSampleTransfers, from.getItems(), EntityType.SAMPLE, TransferSample::new, SampleImpl::new, SampleBoxPosition::new, Sample::setBoxPosition);
    addTransferItems(to::getLibraryTransfers, from.getItems(), EntityType.LIBRARY, TransferLibrary::new, LibraryImpl::new, LibraryBoxPosition::new, Library::setBoxPosition);
    addTransferItems(to::getLibraryAliquotTransfers, from.getItems(), EntityType.LIBRARY_ALIQUOT, TransferLibraryAliquot::new, LibraryAliquot::new, LibraryAliquotBoxPosition::new, LibraryAliquot::setBoxPosition);
    addTransferItems(to::getPoolTransfers, from.getItems(), EntityType.POOL, TransferPool::new, PoolImpl::new, PoolBoxPosition::new, Pool::setBoxPosition);
    return to;
}

Example 5 with PoolImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.PoolImpl in project miso-lims by miso-lims.

the class Dtos method to.

public static Pool to(@Nonnull PoolDto dto) {
    PoolImpl to = new PoolImpl();
    setLong(to::setId, dto.getId(), false);
    to.setAlias(dto.getAlias());
    setBigDecimal(to::setConcentration, dto.getConcentration());
    to.setConcentrationUnits(dto.getConcentrationUnits());
    setInteger(to::setDnaSize, dto.getDnaSize(), true);
    to.setCreationDate(parseDate(dto.getCreationDate()));
    to.setDescription(dto.getDescription());
    to.setIdentificationBarcode(dto.getIdentificationBarcode());
    to.setDiscarded(dto.isDiscarded());
    setBigDecimal(to::setVolume, dto.getVolume());
    to.setVolumeUnits(dto.getVolumeUnits());
    setObject(to::setPlatformType, dto.getPlatformType(), pt -> PlatformType.valueOf(pt));
    if (dto.getPooledElements() != null) {
        to.setPoolElements(dto.getPooledElements().stream().map(aliquot -> {
            ListLibraryAliquotView view = new ListLibraryAliquotView();
            view.setId(aliquot.getId());
            view.setName(aliquot.getName());
            setBigDecimal(view::setVolumeUsed, aliquot.getVolumeUsed());
            PoolElement link = new PoolElement(to, view);
            if (aliquot.getProportion() != null) {
                link.setProportion(aliquot.getProportion());
            }
            return link;
        }).collect(Collectors.toSet()));
    }
    to.setQcPassed(dto.getQcPassed());
    to.setBoxPosition((PoolBoxPosition) makeBoxablePosition(dto, to));
    if (dto.isMergeChild())
        to.makeMergeChild();
    return to;
}