Examples with Group com.eaglegenomics.simlims.core.Group used on opensource projects

Example 1 with Group

use of com.eaglegenomics.simlims.core.Group in project miso-lims by miso-lims.

the class DefaultTransferServiceTest method validateRecipientChangeAllowed.

@Test
public void validateRecipientChangeAllowed() throws Exception {
    Group group1 = makeGroup(1L);
    setUser(false, group1);
    Transfer before = makeTransfer(group1, "Recipient");
    Transfer updated = copyTransfer(before);
    updated.setRecipient("Changed");
    List<ValidationError> errors = validate(updated, before);
    assertNoError(errors, "Only administrators and members of the sender group can change recipient");
}

Example 2 with Group

use of com.eaglegenomics.simlims.core.Group in project miso-lims by miso-lims.

the class DefaultTransferServiceTest method validateRecipientGroupChangeAllowed.

@Test
public void validateRecipientGroupChangeAllowed() throws Exception {
    Group group1 = makeGroup(1L);
    setUser(false, group1);
    Transfer before = makeTransfer(group1, makeGroup(2L));
    Transfer updated = copyTransfer(before);
    updated.setRecipientGroup(makeGroup(3L));
    List<ValidationError> errors = validate(updated, before);
    assertNoError(errors, "Only administrators and members of the sender group can change recipient group");
}

Example 3 with Group

use of com.eaglegenomics.simlims.core.Group in project miso-lims by miso-lims.

the class DefaultTransferServiceTest method setUser.

private void setUser(boolean isAdmin, Group... groups) throws IOException {
    User user = new UserImpl();
    user.setId(1L);
    Mockito.when(authorizationManager.getCurrentUser()).thenReturn(user);
    Mockito.when(authorizationManager.isAdminUser()).thenReturn(isAdmin);
    Mockito.when(authorizationManager.isGroupMember(Mockito.any())).thenReturn(false);
    if (groups.length > 0) {
        for (Group group : groups) {
            Mockito.when(authorizationManager.isGroupMember(group)).thenReturn(true);
        }
    }
}

Example 4 with Group

use of com.eaglegenomics.simlims.core.Group in project miso-lims by miso-lims.

the class Dtos method to.

public static Transfer to(@Nonnull TransferDto from) {
    Transfer to = new Transfer();
    setLong(to::setId, from.getId(), false);
    setString(to::setTransferRequestName, from.getTransferRequestName());
    setDateTime(to::setTransferTime, from.getTransferTime());
    setObject(to::setSenderLab, LabImpl::new, from.getSenderLabId());
    setObject(to::setSenderGroup, Group::new, from.getSenderGroupId());
    setString(to::setRecipient, from.getRecipient());
    setObject(to::setRecipientGroup, Group::new, from.getRecipientGroupId());
    addTransferItems(to::getSampleTransfers, from.getItems(), EntityType.SAMPLE, TransferSample::new, SampleImpl::new, SampleBoxPosition::new, Sample::setBoxPosition);
    addTransferItems(to::getLibraryTransfers, from.getItems(), EntityType.LIBRARY, TransferLibrary::new, LibraryImpl::new, LibraryBoxPosition::new, Library::setBoxPosition);
    addTransferItems(to::getLibraryAliquotTransfers, from.getItems(), EntityType.LIBRARY_ALIQUOT, TransferLibraryAliquot::new, LibraryAliquot::new, LibraryAliquotBoxPosition::new, LibraryAliquot::setBoxPosition);
    addTransferItems(to::getPoolTransfers, from.getItems(), EntityType.POOL, TransferPool::new, PoolImpl::new, PoolBoxPosition::new, Pool::setBoxPosition);
    return to;
}

Example 5 with Group

use of com.eaglegenomics.simlims.core.Group in project miso-lims by miso-lims.

the class Dtos method toReceiptTransfer.

private static <T extends Boxable, R extends TransferItem<T>> R toReceiptTransfer(@Nonnull ReceivableDto<T, R> from, @Nonnull T item) {
    if (isStringEmptyOrNull(from.getReceivedTime())) {
        return null;
    }
    R transferItem = from.makeTransferItem();
    transferItem.setItem(item);
    setBoolean(transferItem::setReceived, from.isReceived(), true);
    setBoolean(transferItem::setQcPassed, from.isReceiptQcPassed(), true);
    setString(transferItem::setQcNote, from.getReceiptQcNote());
    Transfer transfer = new Transfer();
    transferItem.setTransfer(transfer);
    from.getTransferItemsFunction().apply(transfer).add(transferItem);
    setDateTime(transfer::setTransferTime, from.getReceivedTime());
    setObject(transfer::setSenderLab, LabImpl::new, from.getSenderLabId());
    setObject(transfer::setRecipientGroup, Group::new, from.getRecipientGroupId());
    return transferItem;
}