Examples with SampleTissuePieceImpl uk.ac.bbsrc.tgac.miso.core.data.impl.SampleTissuePieceImpl used on opensource projects

Example 1 with SampleTissuePieceImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.SampleTissuePieceImpl in project miso-lims by miso-lims.

the class Dtos method toTissuePieceSample.

private static SampleTissuePiece toTissuePieceSample(@Nonnull SampleTissuePieceDto from) {
    SampleTissuePiece to = new SampleTissuePieceImpl();
    TissuePieceType tissuePieceType = new TissuePieceType();
    tissuePieceType.setId(from.getTissuePieceTypeId());
    to.setTissuePieceType(tissuePieceType);
    to.setSlidesConsumed(from.getSlidesConsumed());
    setObject(to::setReferenceSlide, SampleSlideImpl::new, from.getReferenceSlideId());
    return to;
}

Example 2 with SampleTissuePieceImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.SampleTissuePieceImpl in project miso-lims by miso-lims.

the class OicrSampleAliasGeneratorTest method makeLcmTube.

private SampleTissuePiece makeLcmTube() {
    SampleTissuePiece lcmTube = new SampleTissuePieceImpl();
    SampleTissue tissue = makeMinimalTissue();
    tissue.setAlias("PROJ_0001_nn_n_nn_1-1");
    lcmTube.setParent(tissue);
    lcmTube.setSiblingNumber(2);
    SampleClass sc = new SampleClassImpl();
    sc.setSampleCategory(SampleTissueProcessing.CATEGORY_NAME);
    sc.setSuffix("LCM");
    lcmTube.setSampleClass(sc);
    return lcmTube;
}

Example 3 with SampleTissuePieceImpl

use of uk.ac.bbsrc.tgac.miso.core.data.impl.SampleTissuePieceImpl in project miso-lims by miso-lims.

the class V2SampleAliasGeneratorTest method makeLcmTube.

private SampleTissuePiece makeLcmTube() {
    SampleTissuePiece lcmTube = new SampleTissuePieceImpl();
    SampleTissue tissue = makeTissue();
    tissue.setAlias("PROJ_0001_01");
    lcmTube.setParent(tissue);
    lcmTube.setSiblingNumber(2);
    SampleClass sc = new SampleClassImpl();
    sc.setSampleCategory(SampleTissueProcessing.CATEGORY_NAME);
    lcmTube.setSampleClass(sc);
    TissuePieceType pieceType = new TissuePieceType();
    pieceType.setV2NamingCode("TL");
    lcmTube.setTissuePieceType(pieceType);
    return lcmTube;
}