Examples with Workset uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset used on opensource projects

Example 1 with Workset

use of uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset in project miso-lims by miso-lims.

the class WorksetPageIT method testCreate.

@Test
public void testCreate() {
    WorksetPage page = getWorksetPage(null);
    Map<Field, String> fields = new HashMap<>();
    fields.put(Field.ALIAS, "Test Set");
    fields.put(Field.DESCRIPTION, "Test description");
    page.setFields(fields);
    assertEquals("", page.getField(Field.ID));
    assertFieldValues("changes pre-save", fields, page);
    WorksetPage savedPage = page.clickSave();
    assertNotNull("Workset should save successfully", savedPage);
    assertFieldValues("changes post-save", fields, savedPage);
    Workset workset = (Workset) getSession().get(Workset.class, Long.valueOf(savedPage.getField(Field.ID)));
    assertEquals(fields.get(Field.ALIAS), workset.getAlias());
    assertEquals(fields.get(Field.DESCRIPTION), workset.getDescription());
}

Example 2 with Workset

use of uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset in project miso-lims by miso-lims.

the class DefaultLibraryService method beforeDelete.

@Override
public void beforeDelete(Library object) throws IOException {
    List<Workset> worksets = worksetService.listByLibrary(object.getId());
    for (Workset workset : worksets) {
        worksetService.removeLibraries(workset, Collections.singleton(object));
    }
    Box box = object.getBox();
    if (box != null) {
        box.getBoxPositions().remove(object.getBoxPosition());
        boxService.save(box);
    }
    fileAttachmentService.beforeDelete(object);
}

Example 3 with Workset

use of uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset in project miso-lims by miso-lims.

the class DefaultWorksetService method update.

@Override
public long update(Workset workset) throws IOException {
    Workset managed = worksetStore.get(workset.getId());
    validateChange(workset, managed);
    applyChanges(workset, managed);
    managed.setChangeDetails(authorizationManager.getCurrentUser());
    return worksetStore.save(managed);
}

Example 4 with Workset

use of uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset in project miso-lims by miso-lims.

the class DefaultSampleService method beforeDelete.

@Override
public void beforeDelete(Sample object) throws IOException {
    List<Workset> worksets = worksetService.listBySample(object.getId());
    for (Workset workset : worksets) {
        worksetService.removeSamples(workset, Collections.singleton(object));
    }
    Box box = object.getBox();
    if (box != null) {
        box.getBoxPositions().remove(object.getBoxPosition());
        boxService.save(box);
    }
    fileAttachmentService.beforeDelete(object);
}

Example 5 with Workset

use of uk.ac.bbsrc.tgac.miso.core.data.impl.workset.Workset in project miso-lims by miso-lims.

the class Dtos method to.

public static Workset to(@Nonnull WorksetDto from) {
    Workset workset = new Workset();
    setLong(workset::setId, from.getId(), false);
    setString(workset::setAlias, from.getAlias());
    setString(workset::setDescription, from.getDescription());
    setObject(workset::setCategory, WorksetCategory::new, from.getCategoryId());
    setObject(workset::setStage, WorksetStage::new, from.getStageId());
    setWorksetItems(workset::setWorksetSamples, from.getSampleIds(), WorksetSample::new, SampleImpl::new);
    setWorksetItems(workset::setWorksetLibraries, from.getLibraryIds(), WorksetLibrary::new, LibraryImpl::new);
    setWorksetItems(workset::setWorksetLibraryAliquots, from.getLibraryAliquotIds(), WorksetLibraryAliquot::new, LibraryAliquot::new);
    return workset;
}