Examples with Dtos uk.ac.bbsrc.tgac.miso.dto.Dtos used on opensource projects

Example 26 with Dtos

use of uk.ac.bbsrc.tgac.miso.dto.Dtos in project miso-lims by miso-lims.

the class UserRestController method create.

@PostMapping
@ResponseBody
public UserDto create(@RequestBody UserDto dto) throws IOException {
    if (!securityManager.canCreateNewUser()) {
        throw new RestException("Cannot create new users in MISO directly.", Status.BAD_REQUEST);
    }
    return RestUtils.createObject("User", dto, d -> {
        User user = Dtos.to(d);
        user.setPassword(passwordEncoder.encode(d.getPassword()));
        return user;
    }, userService, Dtos::asDto);
}

Example 27 with Dtos

use of uk.ac.bbsrc.tgac.miso.dto.Dtos in project miso-lims by miso-lims.

the class RequisitionController method edit.

@GetMapping("/{id}")
public ModelAndView edit(@PathVariable long id, ModelMap model) throws IOException {
    Requisition requisition = requisitionService.get(id);
    if (requisition == null) {
        throw new NotFoundException("No requisition found for ID: " + id);
    }
    model.put("title", "Requisition " + id);
    List<Sample> samples = sampleService.list(0, 0, false, "id", PaginationFilter.requisitionId(id));
    List<Sample> extractions = sampleService.getChildren(samples.stream().map(Sample::getId).collect(Collectors.toSet()), SampleStock.CATEGORY_NAME);
    List<SampleDto> extractionDtos = extractions.stream().map(sam -> Dtos.asDto(sam, false)).collect(Collectors.toList());
    model.put("extractions", extractionDtos);
    List<Long> libraryIds = libraryService.listIdsByRequisitionId(id);
    List<Run> runs = runService.listByLibraryIdList(libraryIds);
    List<RunDto> runDtos = runs.stream().map(Dtos::asDto).collect(Collectors.toList());
    model.put("runs", runDtos);
    return setupForm(requisition, PageMode.EDIT, model);
}

Example 28 with Dtos

use of uk.ac.bbsrc.tgac.miso.dto.Dtos in project miso-lims by miso-lims.

the class TransferController method setupForm.

public ModelAndView setupForm(Transfer transfer, PageMode pageMode, boolean editSend, boolean editReceipt, ModelMap model) throws IOException {
    ObjectMapper mapper = new ObjectMapper();
    ObjectNode formConfig = mapper.createObjectNode();
    formConfig.put(PageMode.PROPERTY, pageMode.getLabel());
    formConfig.put("editSend", editSend);
    formConfig.put("editReceipt", editReceipt);
    Collection<Group> senderGroups = null;
    User user = authorizationManager.getCurrentUser();
    if (user.isAdmin()) {
        senderGroups = groupService.list();
    } else if (editSend && transfer.getSenderLab() == null) {
        senderGroups = user.getGroups();
    } else if (transfer.getSenderGroup() != null) {
        senderGroups = Collections.singleton(transfer.getSenderGroup());
    } else {
        senderGroups = Collections.emptySet();
    }
    MisoWebUtils.addJsonArray(mapper, formConfig, "senderGroups", senderGroups, Dtos::asDto);
    Collection<Group> recipientGroups = null;
    if (user.isAdmin() || editSend) {
        recipientGroups = groupService.list();
    } else if (transfer.getRecipientGroup() != null) {
        recipientGroups = Collections.singleton(transfer.getRecipientGroup());
    } else {
        recipientGroups = Collections.emptySet();
    }
    MisoWebUtils.addJsonArray(mapper, formConfig, "recipientGroups", recipientGroups, Dtos::asDto);
    ObjectNode itemsListConfig = mapper.createObjectNode();
    itemsListConfig.put("editSend", editSend);
    itemsListConfig.put("editReceipt", editReceipt);
    model.put(PageMode.PROPERTY, pageMode.getLabel());
    model.put("transfer", transfer);
    model.put("transferDto", mapper.writeValueAsString(Dtos.asDto(transfer)));
    model.put("formConfig", mapper.writeValueAsString(formConfig));
    model.put("itemsListConfig", mapper.writeValueAsString(itemsListConfig));
    model.put("notificationsEnabled", notificationsEnabled());
    return new ModelAndView("/WEB-INF/pages/editTransfer.jsp", model);
}

Example 29 with Dtos

use of uk.ac.bbsrc.tgac.miso.dto.Dtos in project miso-lims by miso-lims.

the class QcTableTag method doStartTagInternal.

@Override
protected int doStartTagInternal() throws Exception {
    QualityControllable<?> qcItem = (QualityControllable<?>) item;
    ObjectMapper mapper = new ObjectMapper();
    pageContext.getOut().append(String.format("<br/><h1>QCs</h1><table id='%1$s' class='display no-border ui-widget-content'></table><script type='text/javascript'>jQuery(document).ready(function () { ListUtils.createStaticTable('%1$s', ListTarget.qc('%2$s'), { entityId : %3$d }, %4$s);});</script>", getId(), qcItem.getQcTarget(), qcItem.getId(), mapper.writeValueAsString(qcItem.getQCs().stream().map(Dtos::asDto).collect(Collectors.toList()))));
    return SKIP_BODY;
}