use of uk.ac.ebi.spot.goci.curation.exception.PubmedImportException in project goci by EBISPOT.
the class StudyController method importStudy.
// Save study found by Pubmed Id
// @ModelAttribute is a reference to the object holding the data entered in the form
@RequestMapping(value = "/new/import", produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.POST)
public synchronized String importStudy(@ModelAttribute PubmedIdForImport pubmedIdForImport, HttpServletRequest request, Model model) throws PubmedImportException, NoStudyDirectoryException {
// Remove whitespace
String pubmedId = pubmedIdForImport.getPubmedId().trim();
// Check if there is an existing study with the same pubmed id
Collection<Study> existingStudies = studyRepository.findByPubmedId(pubmedId);
if (existingStudies.size() > 0) {
throw new PubmedImportException();
} else {
// Pass to importer
Study importedStudy = defaultPubMedSearchService.findPublicationSummary(pubmedId);
Study savedStudy = studyOperationsService.createStudy(importedStudy, currentUserDetailsService.getUserFromRequest(request));
// Create directory to store associated files
try {
studyFileService.createStudyDir(savedStudy.getId());
} catch (NoStudyDirectoryException e) {
getLog().error("No study directory exception");
model.addAttribute("study", savedStudy);
return "error_pages/study_dir_failure";
}
return "redirect:/studies/" + savedStudy.getId();
}
}
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