Examples with StudyNoteForm uk.ac.ebi.spot.goci.curation.model.StudyNoteForm used on opensource projects

Example 1 with StudyNoteForm

use of uk.ac.ebi.spot.goci.curation.model.StudyNoteForm in project goci by EBISPOT.

the class StudyNoteOperationsService method generateSystemNoteForms.

public List<StudyNoteForm> generateSystemNoteForms(Collection<StudyNote> notes) {
    List<StudyNoteForm> sysNoteForms = new ArrayList<StudyNoteForm>();
    if (!notes.isEmpty()) {
        filterSystemNote(notes).forEach(sysNote -> {
            StudyNoteForm row = convertToStudyNoteForm(sysNote);
            sysNoteForms.add(row);
        });
    }
    return sysNoteForms;
}

Example 2 with StudyNoteForm

use of uk.ac.ebi.spot.goci.curation.model.StudyNoteForm in project goci by EBISPOT.

the class StudyNoteOperationsService method generateNonSystemNoteForms.

public List<StudyNoteForm> generateNonSystemNoteForms(Collection<StudyNote> notes) {
    List<StudyNoteForm> sysNoteForms = new ArrayList<StudyNoteForm>();
    if (!notes.isEmpty()) {
        filterNomalNote(notes).forEach(sysNote -> {
            StudyNoteForm row = convertToStudyNoteForm(sysNote);
            sysNoteForms.add(row);
        });
    }
    return sysNoteForms;
}

Example 3 with StudyNoteForm

use of uk.ac.ebi.spot.goci.curation.model.StudyNoteForm in project goci by EBISPOT.

the class StudyNoteController method saveNote.

@RequestMapping(value = "/studies/{studyId}/notes", method = RequestMethod.POST, params = { "saveNote" })
public String saveNote(@ModelAttribute("multiStudyNoteForm") @Valid MultiStudyNoteForm multiStudyNoteForm, BindingResult bindingResult, Model model, @PathVariable Long studyId, HttpServletRequest req) {
    //Index of value to save
    final Integer rowId = Integer.valueOf(req.getParameter("saveNote"));
    //get the study
    Study study = studyRepository.findOne(studyId);
    model.addAttribute("study", study);
    //the newly added note can only be assigned one of the availlable subject, not including system note subjects.
    Collection<NoteSubject> noteSubjects = noteSubjectService.findNonSystemNoteSubject();
    model.addAttribute("availableNoteSubject", noteSubjects);
    //form validation
    if (bindingResult.hasErrors()) {
        //reload system notes because they are not part of the input
        multiStudyNoteForm.setSystemNoteForms(studyNoteOperationsService.generateSystemNoteForms(study.getNotes()));
        model.addAttribute("availableNoteSubject", noteSubjects);
        model.addAttribute("multiStudyNoteForm", multiStudyNoteForm);
        return "study_notes";
    }
    //convert studynoteform to studynote domain object and save
    StudyNoteForm snf = multiStudyNoteForm.getNomalNoteForms().get(rowId.intValue());
    StudyNote noteToEdit = studyNoteOperationsService.convertToStudyNote(snf, study);
    SecureUser user = currentUserDetailsService.getUserFromRequest(req);
    ErrorNotification notification = studyOperationsService.addStudyNote(study, noteToEdit, user);
    if (!notification.hasErrors()) {
        return "redirect:/studies/" + studyId + "/notes";
    } else {
        //deal with error
        // we want to display the error to the user simply on top of the form
        getLog().warn("Request: " + req.getRequestURL() + " raised an error." + notification.errorMessage());
        model.addAttribute("errors", "Update FAIL! " + notification.errorMessage());
        multiStudyNoteForm.setSystemNoteForms(studyNoteOperationsService.generateSystemNoteForms(study.getNotes()));
        model.addAttribute("availableNoteSubject", noteSubjects);
        model.addAttribute("multiStudyNoteForm", multiStudyNoteForm);
    }
    return "study_notes";
}

Example 4 with StudyNoteForm

use of uk.ac.ebi.spot.goci.curation.model.StudyNoteForm in project goci by EBISPOT.

the class StudyNoteController method addNoteToTable.

@RequestMapping(value = "/studies/{studyId}/notes", method = RequestMethod.POST, params = { "addNote" })
public String addNoteToTable(Model model, @PathVariable Long studyId, HttpServletRequest request) {
    //get the study
    Study study = studyRepository.findOne(studyId);
    model.addAttribute("study", study);
    if (study.getHousekeeping().getIsPublished()) {
        return "redirect:/studies/" + studyId + "/notes";
    }
    //the newly added note can only be assigned one of the availlable subject, not including system note subjects.
    Collection<NoteSubject> noteSubjects = noteSubjectService.findNonSystemNoteSubject();
    model.addAttribute("availableNoteSubject", noteSubjects);
    // an form object mapped from the studyNote object, it contains a list of notes
    MultiStudyNoteForm msnf = studyNoteOperationsService.generateMultiStudyNoteForm(study.getNotes(), study);
    SecureUser user = currentUserDetailsService.getUserFromRequest(request);
    //create a default study note with default setting
    StudyNote emptyNote = studyNoteOperationsService.createGeneralNote(study, user);
    StudyNoteForm emptyNoteForm = studyNoteOperationsService.convertToStudyNoteForm(emptyNote);
    //attach the empty form
    msnf.getNomalNoteForms().add(emptyNoteForm);
    //Index of value to add
    final Integer rowId = msnf.getNomalNoteForms().size() - 1;
    //enable the edit for the new note and disable all edit for other notes
    msnf.startEdit(rowId);
    //reload system notes because they are not part of the input
    msnf.setSystemNoteForms(studyNoteOperationsService.generateSystemNoteForms(study.getNotes()));
    model.addAttribute("multiStudyNoteForm", msnf);
    return "study_notes";
}

Example 5 with StudyNoteForm

use of uk.ac.ebi.spot.goci.curation.model.StudyNoteForm in project goci by EBISPOT.

the class StudyNoteController method removeNote.

@RequestMapping(value = "/studies/{studyId}/notes", method = RequestMethod.POST, params = { "removeNote" })
public String removeNote(@ModelAttribute("multiStudyNoteForm") MultiStudyNoteForm multiStudyNoteForm, BindingResult bindingResult, Model model, @PathVariable Long studyId, HttpServletRequest req) {
    //Index of value to remove
    final Integer rowId = Integer.valueOf(req.getParameter("removeNote"));
    //get the study
    Study study = studyRepository.findOne(studyId);
    model.addAttribute("study", study);
    StudyNoteForm snf = multiStudyNoteForm.getNomalNoteForms().get(rowId.intValue());
    StudyNote noteToRemove = studyNoteOperationsService.convertToStudyNote(snf, study);
    //if not removing empty row
    if (noteToRemove.getId() != null) {
        ErrorNotification notification = studyOperationsService.deleteStudyNote(study, noteToRemove);
        if (notification.hasErrors()) {
            //we want to display the error to the user simply on top of the form
            getLog().warn("Request: " + req.getRequestURL() + " raised an error." + notification.errorMessage());
            model.addAttribute("errors", "Delete FAIL! " + notification.errorMessage());
            Collection<NoteSubject> noteSubjects = noteSubjectService.findNonSystemNoteSubject();
            model.addAttribute("availableNoteSubject", noteSubjects);
            model.addAttribute("multiStudyNoteForm", multiStudyNoteForm);
            return "study_notes";
        } else {
            return "redirect:/studies/" + studyId + "/notes";
        }
    }
    return "redirect:/studies/" + studyId + "/notes";
}