Examples with DocumentEmbeddingException uk.ac.ebi.spot.goci.exception.DocumentEmbeddingException used on opensource projects

Example 1 with DocumentEmbeddingException

use of uk.ac.ebi.spot.goci.exception.DocumentEmbeddingException in project goci by EBISPOT.

the class EmbeddableDocument method embed.

public void embed(Document document) {
    try {
        Set<String> excludeNames = new HashSet<>();
        BeanInfo objectInfo = Introspector.getBeanInfo(Document.class);
        for (PropertyDescriptor descriptor : objectInfo.getPropertyDescriptors()) {
            excludeNames.add(descriptor.getName());
        }
        try {
            BeanInfo docInfo = Introspector.getBeanInfo(document.getClass());
            for (PropertyDescriptor descriptor : docInfo.getPropertyDescriptors()) {
                if (!excludeNames.contains(descriptor.getName())) {
                    boolean isExcluded = false;
                    Method readMethod = descriptor.getReadMethod();
                    readMethod.setAccessible(true);
                    if (readMethod.isAnnotationPresent(NonEmbeddableField.class)) {
                        isExcluded = true;
                    } else {
                        try {
                            Field field = document.getClass().getDeclaredField(descriptor.getName());
                            field.setAccessible(true);
                            if (field.isAnnotationPresent(NonEmbeddableField.class)) {
                                isExcluded = true;
                            }
                        } catch (NoSuchFieldException e) {
                        // no field with this name, skip
                        }
                    }
                    if (!isExcluded) {
                        try {
                            // determine method to update this document with doc being embedded
                            Method propertyAdderMethod = findPropertyAdder(descriptor);
                            // invoke read method on passed document
                            Object fieldToEmbed = descriptor.getReadMethod().invoke(document);
                            propertyAdderMethod.invoke(this, fieldToEmbed);
                        } catch (InvocationTargetException | IllegalAccessException e) {
                            throw new DocumentEmbeddingException("Failed to read property '" + descriptor.getName() + "'", e);
                        }
                    }
                }
            }
        } catch (IntrospectionException e) {
            throw new DocumentEmbeddingException("Failed to analyse document in preparation for embedding", e);
        }
    } catch (IntrospectionException e) {
        throw new DocumentEmbeddingException("Failed to read Object.class when determining which properties to exclude", e);
    }
}

Example 2 with DocumentEmbeddingException

use of uk.ac.ebi.spot.goci.exception.DocumentEmbeddingException in project goci by EBISPOT.

the class EmbeddableDocument method findPropertyAdder.

protected Method findPropertyAdder(PropertyDescriptor propertyDescriptor) throws DocumentEmbeddingException {
    String propertyName = propertyDescriptor.getName();
    Class<?> propertyType = propertyDescriptor.getPropertyType();
    String adderTarget = "add".concat(propertyName.substring(0, 1).toUpperCase()).concat(propertyName.substring(1));
    Method[] methods = getClass().getMethods();
    List<Method> matchedMethods = new ArrayList<>();
    for (Method m : methods) {
        if (m.getName().equals(adderTarget)) {
            Class<?>[] parameterTypes = m.getParameterTypes();
            if (parameterTypes.length == 1) {
                if (parameterTypes[0].isAssignableFrom(propertyType)) {
                    matchedMethods.add(m);
                } else {
                    throw new DocumentEmbeddingException("Incompatible method '" + m.getName() + "': wrong argument type.  " + "Expected " + propertyType.getName() + ", " + "found " + parameterTypes[0].getClass().getName());
                }
            } else {
                throw new DocumentEmbeddingException("Incompatible method '" + m.getName() + "': too many arguments.  " + "Expected 1 (" + propertyType.getName() + "), " + "found " + parameterTypes.length + " (" + Arrays.toString(parameterTypes) + ")");
            }
        }
    }
    if (matchedMethods.size() > 1) {
        throw new DocumentEmbeddingException("Ambiguous property type: found " + matchedMethods.size() + " " + "methods named '" + adderTarget + "' with matching argument types");
    }
    if (matchedMethods.size() == 0) {
        throw new DocumentEmbeddingException("Failed to identify appropriate method for embedding: " + this.getClass().getName() + " " + "has no method to embed property '" + propertyDescriptor.getName() + "' " + "(missing method " + adderTarget + ")");
    }
    return matchedMethods.iterator().next();
}