Examples with DiseaseTrait uk.ac.ebi.spot.goci.model.DiseaseTrait used on opensource projects

Example 1 with DiseaseTrait

use of uk.ac.ebi.spot.goci.model.DiseaseTrait in project goci by EBISPOT.

the class DiseaseTraitController method viewDiseaseTraitToDelete.

// Delete a disease trait
@RequestMapping(value = "/{diseaseTraitId}/delete", produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.GET)
public String viewDiseaseTraitToDelete(Model model, @PathVariable Long diseaseTraitId) {
    DiseaseTrait diseaseTraitToView = diseaseTraitRepository.findOne(diseaseTraitId);
    Collection<Study> studiesLinkedToTrait = studyRepository.findByDiseaseTraitId(diseaseTraitId);
    model.addAttribute("studies", studiesLinkedToTrait);
    model.addAttribute("totalStudies", studiesLinkedToTrait.size());
    model.addAttribute("diseaseTrait", diseaseTraitToView);
    return "delete_disease_trait";
}

Example 2 with DiseaseTrait

use of uk.ac.ebi.spot.goci.model.DiseaseTrait in project goci by EBISPOT.

the class DiseaseTraitUploadController method updloadDiseaseTraits.

@PostMapping("/uploads")
public Object updloadDiseaseTraits(@Valid FileUploadRequest fileUploadRequest, BindingResult result) {
    if (result.hasErrors()) {
        throw new FileValidationException(result);
    }
    MultipartFile multipartFile = fileUploadRequest.getMultipartFile();
    List<DiseaseTrait> diseaseTraits = DiseaseTraitDtoAssembler.disassemble(multipartFile);
    diseaseTraits = diseaseTraitService.createDiseaseTraits(diseaseTraits);
    log.info("{} {} were created", diseaseTraits.size(), EntityType.DISEASE_TRAIT);
    return new ResponseEntity<>(DiseaseTraitDtoAssembler.assemble(diseaseTraits), HttpStatus.CREATED);
}

Example 3 with DiseaseTrait

use of uk.ac.ebi.spot.goci.model.DiseaseTrait in project goci by EBISPOT.

the class OldDiseaseTraitController method allDiseaseTraits.

// Return all disease traits
@RequestMapping(produces = MediaType.TEXT_HTML_VALUE, method = RequestMethod.GET)
public String allDiseaseTraits(Model model) {
    Sort sort = sortByTraitAsc();
    List<DiseaseTrait> allDiseaseTraits = diseaseTraitRepository.findAll(sort);
    model.addAttribute("diseaseTraits", allDiseaseTraits);
    model.addAttribute("totaldiseaseTraits", allDiseaseTraits.size());
    // Return an empty DiseaseTrait object so user can add a new one
    model.addAttribute("diseaseTrait", new DiseaseTrait());
    return "disease_traits";
}

Example 4 with DiseaseTrait

use of uk.ac.ebi.spot.goci.model.DiseaseTrait in project goci by EBISPOT.

the class DiseaseTraitController method getDiseaseTraits.

@GetMapping(produces = MediaTypes.HAL_JSON_VALUE)
public Object getDiseaseTraits(PagedResourcesAssembler<DiseaseTrait> assembler, @SortDefault(sort = "trait", direction = Sort.Direction.DESC) @PageableDefault(size = 10, page = 0) Pageable pageable) {
    Page<DiseaseTrait> pagedDiseaseTraits = diseaseTraitService.getDiseaseTraits(pageable);
    final ControllerLinkBuilder linkBuilder = ControllerLinkBuilder.linkTo(ControllerLinkBuilder.methodOn(DiseaseTraitController.class).getDiseaseTraits(assembler, pageable));
    return assembler.toResource(pagedDiseaseTraits, diseaseTraitDtoAssembler, linkBuilder.withSelfRel());
}

Example 5 with DiseaseTrait

use of uk.ac.ebi.spot.goci.model.DiseaseTrait in project goci by EBISPOT.

the class DiseaseTraitController method searchDiseaseTraitsByParam.

@GetMapping(value = "/search", produces = MediaTypes.HAL_JSON_VALUE)
public Object searchDiseaseTraitsByParam(PagedResourcesAssembler<DiseaseTrait> assembler, @RequestParam String query, Pageable pageable) {
    Page<DiseaseTrait> pagedDiseaseTraits = diseaseTraitService.searchByParameter(query, pageable);
    final ControllerLinkBuilder linkBuilder = ControllerLinkBuilder.linkTo(ControllerLinkBuilder.methodOn(DiseaseTraitController.class).getDiseaseTraits(assembler, pageable));
    return assembler.toResource(pagedDiseaseTraits, diseaseTraitDtoAssembler, linkBuilder.withSelfRel());
}