Examples with EnsemblDbsnpVersionJson uk.ac.ebi.spot.goci.model.EnsemblDbsnpVersionJson used on opensource projects

Example 1 with EnsemblDbsnpVersionJson

use of uk.ac.ebi.spot.goci.model.EnsemblDbsnpVersionJson in project goci by EBISPOT.

the class EnsemblDbsnpVersion method getDbsnpVersion.

/**
     * Getter for the dbSNP version
     *
     * @return the dbSNP version
     */
public int getDbsnpVersion() throws EnsemblRestIOException {
    RestTemplate restTemplate = new RestTemplate();
    String url = getServer() + getEndpoint();
    String version = "";
    try {
        getLog().info("Querying " + url);
        //Ensembl returns an array data structure for this call
        // Have to do some wrangling to get dbSNP version
        EnsemblDbsnpVersionJson[] response = restTemplate.getForObject(url, EnsemblDbsnpVersionJson[].class);
        version = response[0].getVersion();
        if (version.isEmpty()) {
            throw new EnsemblRestIOException("Unable to determine Ensembl dbSNP version");
        }
    } catch (Exception e) {
        throw new EnsemblRestIOException("Problem querying Ensembl API for dbSNP version");
    }
    return Integer.parseInt(version);
}