Examples with ValidationError uk.ac.ebi.spot.goci.model.ValidationError used on opensource projects

Example 11 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckGeneSynthax.

@Test
public void testCheckGeneSynthax() throws Exception {
    when(validationChecks.checkSynthax("SFRP1 x SFRP2", ";")).thenReturn("Value does not contain correct separator");
    ValidationError error1 = errorCreationService.checkGeneSynthax("SFRP1 x SFRP2", ";");
    assertThat(error1).extracting("field", "error", "warning").contains("Gene", "Value does not contain correct separator", false);
    when(validationChecks.checkSynthax("rs2981579; rs123", ";")).thenReturn(null);
    ValidationError error2 = errorCreationService.checkGeneSynthax("rs2981579; rs123", ";");
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
}

Example 12 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckOrIsPresent.

@Test
public void testCheckOrIsPresent() throws Exception {
    when(validationChecks.checkOrIsPresent(null)).thenReturn("Value is empty");
    ValidationError error1 = errorCreationService.checkOrIsPresent((null));
    assertThat(error1).extracting("field", "error", "warning").contains("OR", "Value is empty", false);
    when(validationChecks.checkOrIsPresent((float) 1.23)).thenReturn(null);
    ValidationError error2 = errorCreationService.checkOrIsPresent((float) 1.23);
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
    Float f1 = (float) (0.0 / 0.0);
    when(validationChecks.checkOrIsPresent(f1)).thenReturn("Value is not number");
    ValidationError error3 = errorCreationService.checkOrIsPresent((f1));
    assertThat(error3).extracting("field", "error", "warning").contains("OR", "Value is not number", false);
}

Example 13 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckDescriptionIsEmpty.

@Test
public void testCheckDescriptionIsEmpty() throws Exception {
    when(validationChecks.checkValueIsEmpty(Matchers.anyString())).thenReturn("Value is not empty");
    ValidationError error1 = errorCreationService.checkDescriptionIsEmpty(Matchers.anyString());
    assertThat(error1).extracting("field", "error", "warning").contains("OR/Beta description", "Value is not empty", false);
    String nullValue = null;
    when(validationChecks.checkValueIsEmpty(nullValue)).thenReturn(null);
    ValidationError error2 = errorCreationService.checkDescriptionIsEmpty(nullValue);
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
}

Example 14 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckRangeIsEmpty.

@Test
public void testCheckRangeIsEmpty() throws Exception {
    when(validationChecks.checkValueIsEmpty(Matchers.anyString())).thenReturn("Value is not empty");
    ValidationError error1 = errorCreationService.checkRangeIsEmpty(Matchers.anyString());
    assertThat(error1).extracting("field", "error", "warning").contains("Range", "Value is not empty", false);
    String nullRange = null;
    when(validationChecks.checkValueIsEmpty(nullRange)).thenReturn(null);
    ValidationError error2 = errorCreationService.checkRangeIsEmpty(nullRange);
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
}

Example 15 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class AssociationFileUploadService method createRowValidationSummary.

/**
     * Return a list of syntax errors. These error checks will look for things that would prevent creation of an
     * association which could then be carried forward to full validation
     *
     * @param row Row to validate
     */
private RowValidationSummary createRowValidationSummary(AssociationUploadRow row, String eRelease) {
    getLog().info("Creating row summary for row " + row.getRowNumber());
    Collection<ValidationError> errors = validationService.runRowValidation(row, eRelease);
    RowValidationSummary rowValidationSummary = new RowValidationSummary();
    rowValidationSummary.setRow(row);
    rowValidationSummary.setErrors(errors);
    return rowValidationSummary;
}