Examples with ValidationError uk.ac.ebi.spot.goci.model.ValidationError used on opensource projects

Example 26 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ValidationChecksBuilder method runOrChecks.

/**
     * Run OR checks on a row
     *
     * @param association association to be checked
     */
public Collection<ValidationError> runOrChecks(Association association) {
    Collection<ValidationError> validationErrors = new ArrayList<>();
    ValidationError orAndOrRecipCheck = errorCreationService.checkOrAndOrRecip(association.getOrPerCopyNum(), association.getOrPerCopyRecip());
    validationErrors.add(orAndOrRecipCheck);
    ValidationError betaFoundForOr = errorCreationService.checkBetaValuesIsEmpty(association.getBetaNum());
    validationErrors.add(betaFoundForOr);
    ValidationError betaUnitFoundForOr = errorCreationService.checkBetaUnitIsEmpty(association.getBetaUnit());
    validationErrors.add(betaUnitFoundForOr);
    ValidationError betaDirectionFoundForOr = errorCreationService.checkBetaDirectionIsEmpty(association.getBetaDirection());
    validationErrors.add(betaDirectionFoundForOr);
    ValidationError rangeNotFound = errorCreationService.checkRangeIsPresent(association.getRange());
    validationErrors.add(rangeNotFound);
    ValidationError recipRangeNotFound = errorCreationService.checkOrPerCopyRecipRangeIsPresent(association.getOrPerCopyRecipRange());
    validationErrors.add(recipRangeNotFound);
    return ErrorProcessingService.checkForValidErrors(validationErrors);
}

Example 27 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckGene.

@Test
public void testCheckGene() throws Exception {
    when(validationChecks.checkGene("testX", "")).thenReturn("Gene synbol testX is not valid");
    ValidationError error1 = errorCreationService.checkGene("testX", "");
    assertThat(error1).extracting("field", "error", "warning").contains("Gene", "Gene synbol testX is not valid", true);
    when(validationChecks.checkGene("SFRP1", "")).thenReturn(null);
    ValidationError error2 = errorCreationService.checkGene("SFRP1", "");
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
    when(validationChecks.checkGene("", "")).thenReturn("Gene name is empty");
    ValidationError error3 = errorCreationService.checkGene("", "");
    assertThat(error3).extracting("field", "error", "warning").contains("Gene", "Gene name is empty", true);
}

Example 28 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorProcessingService method createError.

/**
     * Create error object
     *
     * @param message       Error message
     * @param columnChecked Name of the column checked
     */
public static ValidationError createError(String message, String columnChecked, Boolean warning) {
    ValidationError error = new ValidationError();
    // If there is an error create a fully formed object
    if (message != null) {
        error.setField(columnChecked);
        error.setError(message);
        error.setWarning(warning);
    }
    return error;
}

Example 29 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckOrEmpty.

@Test
public void testCheckOrEmpty() throws Exception {
    when(validationChecks.checkValueIsEmpty(Matchers.anyFloat())).thenReturn("Value is not empty");
    ValidationError error1 = errorCreationService.checkOrEmpty(Matchers.anyFloat());
    assertThat(error1).extracting("field", "error", "warning").contains("OR", "Value is not empty", false);
    Float nullValue = null;
    when(validationChecks.checkValueIsEmpty(nullValue)).thenReturn(null);
    ValidationError error2 = errorCreationService.checkOrEmpty(nullValue);
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
}

Example 30 with ValidationError

use of uk.ac.ebi.spot.goci.model.ValidationError in project goci by EBISPOT.

the class ErrorCreationServiceTest method testCheckBetaDirectionIsEmpty.

@Test
public void testCheckBetaDirectionIsEmpty() throws Exception {
    when(validationChecks.checkValueIsEmpty(Matchers.anyString())).thenReturn("Value is not empty");
    ValidationError error1 = errorCreationService.checkBetaDirectionIsEmpty(Matchers.anyString());
    assertThat(error1).extracting("field", "error", "warning").contains("Beta Direction", "Value is not empty", false);
    when(validationChecks.checkValueIsEmpty("")).thenReturn(null);
    ValidationError error2 = errorCreationService.checkBetaDirectionIsEmpty("");
    assertThat(error2).extracting("field", "error", "warning").contains(null, null, false);
}