Examples with DepositionAuthor uk.ac.ebi.spot.goci.model.deposition.DepositionAuthor used on opensource projects

Example 1 with DepositionAuthor

use of uk.ac.ebi.spot.goci.model.deposition.DepositionAuthor in project goci by EBISPOT.

the class SubmissionController method buildSubmission.

private Submission buildSubmission(DepositionSubmission depositionSubmission) {
    Submission testSub = new Submission();
    testSub.setId(depositionSubmission.getSubmissionId());
    testSub.setImportStatus(Submission.ImportStatus.NOT_READY);
    if (depositionSubmission.getPublication() != null) {
        testSub.setPubMedID(depositionSubmission.getPublication().getPmid());
        testSub.setAuthor(depositionSubmission.getPublication().getFirstAuthor());
        testSub.setCurator(depositionSubmission.getCreated().getUser().getName());
        testSub.setStatus(depositionSubmission.getStatus());
        testSub.setTitle(depositionSubmission.getPublication().getTitle());
        testSub.setJournal(depositionSubmission.getPublication().getJournal());
        testSub.setCreated(depositionSubmission.getCreated().getTimestamp().toString(DateTimeFormat.forPattern("yyyy-MM-dd")));
        testSub.setPublicationStatus(depositionSubmission.getPublication().getStatus());
        testSub.setSubmissionType(DepositionUtil.getSubmissionType(depositionSubmission));
        testSub.setPublicationDate(depositionSubmission.getPublication().getPublicationDate());
        if (depositionSubmission.getPublication().getCorrespondingAuthor() != null) {
            DepositionAuthor author = depositionSubmission.getPublication().getCorrespondingAuthor();
            if (author.getGroup() != null) {
                testSub.setCorrespondingAuthor(author.getGroup());
            } else {
                testSub.setCorrespondingAuthor(author.getFirstName() + ' ' + author.getLastName());
            }
        }
        if (testSub.getSubmissionType().equals(Submission.SubmissionType.UNKNOWN)) {
            testSub.setStatus("REVIEW");
        }
    } else if (depositionSubmission.getBodyOfWork() != null) {
        if (depositionSubmission.getBodyOfWork().getFirstAuthor() != null) {
            if (depositionSubmission.getBodyOfWork().getFirstAuthor().getGroup() != null) {
                testSub.setAuthor(depositionSubmission.getBodyOfWork().getFirstAuthor().getGroup());
            } else {
                testSub.setAuthor(depositionSubmission.getBodyOfWork().getFirstAuthor().getFirstName() + ' ' + depositionSubmission.getBodyOfWork().getFirstAuthor().getLastName());
            }
        }
        if (depositionSubmission.getBodyOfWork().getCorrespondingAuthors() != null) {
            DepositionAuthor author = depositionSubmission.getBodyOfWork().getCorrespondingAuthors().get(0);
            if (author.getGroup() != null) {
                testSub.setCorrespondingAuthor(author.getGroup());
            } else {
                testSub.setCorrespondingAuthor(author.getFirstName() + ' ' + author.getLastName());
            }
        }
        testSub.setStatus(depositionSubmission.getStatus());
        testSub.setTitle(depositionSubmission.getBodyOfWork().getTitle());
        testSub.setJournal(depositionSubmission.getBodyOfWork().getJournal());
        testSub.setCreated(depositionSubmission.getCreated().getTimestamp().toString(DateTimeFormat.forPattern("yyyy-MM-dd")));
        testSub.setPublicationStatus(depositionSubmission.getBodyOfWork().getStatus());
        testSub.setSubmissionType(DepositionUtil.getSubmissionType(depositionSubmission));
        if (testSub.getSubmissionType().equals(Submission.SubmissionType.UNKNOWN)) {
            testSub.setStatus("REVIEW");
        }
    }
    boolean importInProgress = submissionImportProgressService.importInProgress(depositionSubmission.getSubmissionId());
    if (importInProgress) {
        testSub.setStatus("IMPORT_IN_PROGRESS");
    }
    if (testSub.getStatus().equalsIgnoreCase("SUBMITTED") && !testSub.getSubmissionType().equals(Submission.SubmissionType.PRE_PUBLISHED) && !testSub.getSubmissionType().equals(Submission.SubmissionType.UNKNOWN)) {
        testSub.setImportStatus(Submission.ImportStatus.READY);
    }
    return testSub;
}