Examples with DepositionAssociationListWrapper uk.ac.ebi.spot.goci.model.deposition.util.DepositionAssociationListWrapper used on opensource projects

Example 1 with DepositionAssociationListWrapper

use of uk.ac.ebi.spot.goci.model.deposition.util.DepositionAssociationListWrapper in project goci by EBISPOT.

the class DepositionAssociationDtoTest method testReadAssociationResponse.

@Test
public void testReadAssociationResponse() {
    String json = "{\n" + "  \"_embedded\" : {\n" + "    \"associations\" : [ {\n" + "      \"study_tag\" : \"30237584_1\",\n" + "      \"variant_id\" : \"rs11749255\",\n" + "      \"pvalue\" : \"0.0000003\",\n" + "      \"effect_allele\" : \"A\",\n" + "      \"other_allele\" : \"\",\n" + "      \"_links\" : {\n" + "        \"parent\" : {\n" + "          \"href\" : \"http://193.62.54.159/backend/v1/submissions/5d514e99dcf21d0001eee221\"\n" + "        }\n" + "      }\n" + "    }, {\n" + "      \"study_tag\" : \"30237584_2\",\n" + "      \"variant_id\" : \"rs12228810\",\n" + "      \"pvalue\" : \"0.000009\",\n" + "      \"effect_allele\" : \"C\",\n" + "      \"other_allele\" : \"\",\n" + "      \"_links\" : {\n" + "        \"parent\" : {\n" + "          \"href\" : \"http://193.62.54.159/backend/v1/submissions/5d514e99dcf21d0001eee221\"\n" + "        }\n" + "      }\n" + "    }, {\n" + "      \"study_tag\" : \"30237584_2\",\n" + "      \"variant_id\" : \"rs16934621\",\n" + "      \"pvalue\" : \"0.000005\",\n" + "      \"effect_allele\" : \"A\",\n" + "      \"other_allele\" : \"\",\n" + "      \"_links\" : {\n" + "        \"parent\" : {\n" + "          \"href\" : \"http://193.62.54.159/backend/v1/submissions/5d514e99dcf21d0001eee221\"\n" + "        }\n" + "      }\n" + "    }, {\n" + "      \"study_tag\" : \"30237584_2\",\n" + "      \"variant_id\" : \"rs3766160\",\n" + "      \"pvalue\" : \"0.000001\",\n" + "      \"effect_allele\" : \"A\",\n" + "      \"other_allele\" : \"\",\n" + "      \"_links\" : {\n" + "        \"parent\" : {\n" + "          \"href\" : \"http://193.62.54.159/backend/v1/submissions/5d514e99dcf21d0001eee221\"\n" + "        }\n" + "      }\n" + "    } ]\n" + "  },\n" + "  \"_links\" : {\n" + "    \"self\" : {\n" + "      \"href\" : \"http://193.62.54.159/backend/v1/submissions/5d514e99dcf21d0001eee221/associations\"\n" + "    }\n" + "  },\n" + "  \"page\" : {\n" + "    \"size\" : 20,\n" + "    \"totalElements\" : 4,\n" + "    \"totalPages\" : 1,\n" + "    \"number\" : 0\n" + "  }\n" + "}\n";
    ObjectMapper objectMapper = new ObjectMapper();
    try {
        objectMapper.registerModule(new JodaModule());
        DepositionAssociationListWrapper associations = objectMapper.readValue(json, DepositionAssociationListWrapper.class);
        assertNotNull(associations);
        assertNotNull(associations.getAssociations().getAssociations().get(0));
        BigDecimal pValue = new BigDecimal(associations.getAssociations().getAssociations().get(0).getPValue());
        assertNotNull(pValue);
        BigInteger sv = pValue.unscaledValue();
        int exponent = pValue.precision() - pValue.scale() - 1;
        assertEquals(3, sv.intValue());
        assertEquals(-7, exponent);
    } catch (IOException e) {
        e.printStackTrace();
        fail(e.getMessage());
    }
}