Examples with ResultsFileFormat uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsFileFormat used on opensource projects

Example 1 with ResultsFileFormat

use of uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsFileFormat in project GDSC-SMLM by aherbert.

the class PeakResultsReaderTest method checkScannerMatchesNonScanner.

private static void checkScannerMatchesNonScanner(RandomSeed seed, boolean showDeviations, boolean showEndFrame, boolean showId, boolean showPrecision, boolean showCategory, boolean sort) {
    final UniformRandomProvider rg = RngUtils.create(seed.getSeed());
    final MemoryPeakResults out = createResults(rg, 1000, showDeviations, showEndFrame, showId, showPrecision, showCategory);
    final String filename = createFile();
    final ResultsFileFormat fileFormat = ResultsFileFormat.TEXT;
    writeFile(false, fileFormat, showDeviations, showEndFrame, showId, showPrecision, showCategory, sort, out, filename);
    final MemoryPeakResults in = readFile(filename, false);
    final MemoryPeakResults in2 = readFile(filename, true);
    checkEqual(fileFormat, showDeviations, showEndFrame, showId, showPrecision, showCategory, sort, in, in2);
}

Example 2 with ResultsFileFormat

use of uk.ac.sussex.gdsc.smlm.data.config.ResultsProtos.ResultsFileFormat in project GDSC-SMLM by aherbert.

the class ResultsManager method addFileResultsOptions.

/**
 * Adds the file results options.
 *
 * @param gd the dialog
 * @param resultsSettings the results settings
 * @param flags the flags
 */
public static void addFileResultsOptions(final ExtendedGenericDialog gd, final Builder resultsSettings, final int flags) {
    if (BitFlagUtils.anyNotSet(flags, FLAG_NO_SECTION_HEADER)) {
        gd.addMessage("--- File output ---");
    }
    final ResultsFileSettings.Builder fileSettings = resultsSettings.getResultsFileSettingsBuilder();
    gd.addChoice("Results_format", SettingsManager.getResultsFileFormatNames(), fileSettings.getFileFormatValue(), new OptionListener<Integer>() {

        @Override
        public boolean collectOptions(Integer field) {
            fileSettings.setFileFormatValue(field);
            return collectOptions(false);
        }

        @Override
        public boolean collectOptions() {
            return collectOptions(true);
        }

        private boolean collectOptions(boolean silent) {
            final ResultsFileFormat resultsFileFormat = fileSettings.getFileFormat();
            if (!ResultsProtosHelper.isGdsc(resultsFileFormat)) {
                return false;
            }
            final ExtendedGenericDialog egd = new ExtendedGenericDialog(TITLE, null);
            if (resultsFileFormat == ResultsFileFormat.TEXT) {
                egd.addChoice("File_distance_unit", SettingsManager.getDistanceUnitNames(), fileSettings.getDistanceUnitValue());
                egd.addChoice("File_intensity_unit", SettingsManager.getIntensityUnitNames(), fileSettings.getIntensityUnitValue());
                egd.addChoice("File_angle_unit", SettingsManager.getAngleUnitNames(), fileSettings.getAngleUnitValue());
                egd.addCheckbox("File_show_precision", fileSettings.getShowPrecision());
            }
            egd.addCheckbox("Show_deviations", resultsSettings.getShowDeviations());
            egd.setSilent(silent);
            egd.showDialog(true, gd);
            if (egd.wasCanceled()) {
                return false;
            }
            fileSettings.setDistanceUnitValue(egd.getNextChoiceIndex());
            fileSettings.setIntensityUnitValue(egd.getNextChoiceIndex());
            fileSettings.setAngleUnitValue(egd.getNextChoiceIndex());
            fileSettings.setShowPrecision(egd.getNextBoolean());
            resultsSettings.setShowDeviations(egd.getNextBoolean());
            return true;
        }
    });
    if (BitFlagUtils.anySet(flags, FLAG_RESULTS_DIRECTORY)) {
        gd.addDirectoryField("Results_directory", fileSettings.getResultsDirectory());
    } else if (BitFlagUtils.anySet(flags, FLAG_RESULTS_FILE)) {
        gd.addFilenameField("Results_file", fileSettings.getResultsFilename());
    } else {
        // However we can set the initial directory if we have a results file.
        if (fileSettings.getResultsFilename() != null) {
            final File dir = new File(fileSettings.getResultsFilename()).getParentFile();
            if (dir != null) {
                OpenDialog.setDefaultDirectory(dir.getPath());
            }
        }
        gd.addFilenameField("Results_file", "");
    }
}