Examples with Diagnosis uk.nhs.adaptors.scr.models.xml.Diagnosis used on opensource projects

Example 1 with Diagnosis

use of uk.nhs.adaptors.scr.models.xml.Diagnosis in project summary-care-record-api by NHSDigital.

the class ConditionMapper method mapDiagnosis.

private static Diagnosis mapDiagnosis(Condition condition, Bundle bundle) throws FhirMappingException {
    var diagnosis = new Diagnosis();
    diagnosis.setIdRoot(condition.getIdentifierFirstRep().getValue());
    diagnosis.setCodeCode(condition.getCode().getCodingFirstRep().getCode());
    diagnosis.setCodeDisplayName(condition.getCode().getCodingFirstRep().getDisplay());
    diagnosis.setStatusCodeCode(mapStatus(condition));
    if (condition.hasOnsetDateTimeType()) {
        diagnosis.setEffectiveTimeLow(formatDateToHl7(condition.getOnsetDateTimeType()));
    }
    if (condition.hasOnsetPeriod()) {
        Period period = condition.getOnsetPeriod();
        diagnosis.setEffectiveTimeLow(formatDateToHl7(period.getStartElement()));
        diagnosis.setEffectiveTimeHigh(formatDateToHl7(period.getEndElement()));
    }
    Optional.ofNullable(condition.getEvidenceFirstRep().getDetailFirstRep().getReference()).map(reference -> reference.split("/")[1]).ifPresent(diagnosis::setFindingId);
    diagnosis.setSupportingInformation(condition.getNoteFirstRep().getText());
    LOGGER.debug("Looking up Encounter for Condition.id={}", condition.getIdElement().getIdPart());
    var encounterReference = condition.getEncounter().getReference();
    if (StringUtils.isNotBlank(encounterReference)) {
        var encounter = getResourceByReference(bundle, encounterReference, Encounter.class).orElseThrow(() -> new FhirValidationException(String.format("Bundle is Missing Encounter %s that is linked to Condition %s", condition.getEncounter().getReference(), condition.getId())));
        for (var encounterParticipant : encounter.getParticipant()) {
            Coding coding = encounterParticipant.getTypeFirstRep().getCodingFirstRep();
            if (!PARTICIPATION_TYPE_SYSTEM.equals(coding.getSystem())) {
                throw new FhirValidationException("Unsupported encounter participant system: " + coding.getSystem());
            }
            var code = coding.getCode();
            if ("AUT".equals(code)) {
                var author = mapAuthor(bundle, encounterParticipant);
                diagnosis.setAuthor(author);
            } else if ("INF".equals(code)) {
                var informant = mapInformant(bundle, encounterParticipant);
                diagnosis.setInformant(informant);
            } else {
                throw new FhirValidationException(String.format("Invalid encounter %s participant code %s", encounter.getId(), code));
            }
        }
    }
    return diagnosis;
}