Examples with SequencingObjectService ca.corefacility.bioinformatics.irida.service.SequencingObjectService used on opensource projects

Example 1 with SequencingObjectService

use of ca.corefacility.bioinformatics.irida.service.SequencingObjectService in project irida by phac-nml.

the class SampleSequenceFilesControllerTest method setUp.

@Before
public void setUp() {
    sampleService = mock(SampleService.class);
    miseqRunService = mock(SequencingRunService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    analysisService = mock(AnalysisService.class);
    controller = new RESTSampleSequenceFilesController(sampleService, miseqRunService, sequencingObjectService, analysisService);
}

Example 2 with SequencingObjectService

use of ca.corefacility.bioinformatics.irida.service.SequencingObjectService in project irida by phac-nml.

the class AnalysisControllerTest method init.

@Before
public void init() {
    analysisSubmissionServiceMock = mock(AnalysisSubmissionService.class);
    iridaWorkflowsServiceMock = mock(IridaWorkflowsService.class);
    projectServiceMock = mock(ProjectService.class);
    updatePermission = mock(UpdateAnalysisSubmissionPermission.class);
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    analysesListingService = mock(AnalysesListingService.class);
    MessageSource messageSourceMock = mock(MessageSource.class);
    analysisController = new AnalysisController(analysisSubmissionServiceMock, iridaWorkflowsServiceMock, userServiceMock, sampleService, projectServiceMock, updatePermission, metadataTemplateService, sequencingObjectService, analysesListingService, messageSourceMock);
}

Example 3 with SequencingObjectService

use of ca.corefacility.bioinformatics.irida.service.SequencingObjectService in project irida by phac-nml.

the class PipelineControllerTest method setUp.

@Before
public void setUp() {
    referenceFileService = mock(ReferenceFileService.class);
    analysisSubmissionService = mock(AnalysisSubmissionService.class);
    workflowsService = mock(IridaWorkflowsService.class);
    projectService = mock(ProjectService.class);
    userService = mock(UserService.class);
    messageSource = mock(MessageSource.class);
    cartController = mock(CartController.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    namedParameterService = mock(WorkflowNamedParametersService.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    analysisSubmissionSampleProcessor = mock(AnalysisSubmissionSampleProcessor.class);
    galaxyToolDataService = mock(GalaxyToolDataService.class);
    controller = new PipelineController(sequencingObjectService, referenceFileService, analysisSubmissionService, workflowsService, projectService, userService, cartController, messageSource, namedParameterService, updateSamplePermission, analysisSubmissionSampleProcessor, galaxyToolDataService);
    when(messageSource.getMessage(any(), any(), any())).thenReturn("");
}

Example 4 with SequencingObjectService

use of ca.corefacility.bioinformatics.irida.service.SequencingObjectService in project irida by phac-nml.

the class ProjectSamplesControllerTest method setUp.

@Before
public void setUp() {
    projectService = mock(ProjectService.class);
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    projectUtils = mock(ProjectControllerUtils.class);
    messageSource = mock(MessageSource.class);
    controller = new ProjectSamplesController(projectService, sampleService, sequencingObjectService, projectUtils, messageSource);
    user.setId(1L);
    mockSidebarInfo();
}

Example 5 with SequencingObjectService

use of ca.corefacility.bioinformatics.irida.service.SequencingObjectService in project irida by phac-nml.

the class SamplesControllerTest method setUp.

@Before
public void setUp() {
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    projectService = mock(ProjectService.class);
    metadataTemplateService = mock(MetadataTemplateService.class);
    messageSource = mock(MessageSource.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    readSamplePermission = mock(ReadSamplePermission.class);
    controller = new SamplesController(sampleService, projectService, sequencingObjectService, updateSamplePermission, metadataTemplateService, messageSource);
}