Examples with SampleService ca.corefacility.bioinformatics.irida.service.sample.SampleService used on opensource projects

Example 1 with SampleService

use of ca.corefacility.bioinformatics.irida.service.sample.SampleService in project irida by phac-nml.

the class SampleSequenceFilesControllerTest method setUp.

@Before
public void setUp() {
    sampleService = mock(SampleService.class);
    miseqRunService = mock(SequencingRunService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    analysisService = mock(AnalysisService.class);
    controller = new RESTSampleSequenceFilesController(sampleService, miseqRunService, sequencingObjectService, analysisService);
}

Example 2 with SampleService

use of ca.corefacility.bioinformatics.irida.service.sample.SampleService in project irida by phac-nml.

the class AnalysisControllerTest method init.

@Before
public void init() {
    analysisSubmissionServiceMock = mock(AnalysisSubmissionService.class);
    iridaWorkflowsServiceMock = mock(IridaWorkflowsService.class);
    projectServiceMock = mock(ProjectService.class);
    updatePermission = mock(UpdateAnalysisSubmissionPermission.class);
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    analysesListingService = mock(AnalysesListingService.class);
    MessageSource messageSourceMock = mock(MessageSource.class);
    analysisController = new AnalysisController(analysisSubmissionServiceMock, iridaWorkflowsServiceMock, userServiceMock, sampleService, projectServiceMock, updatePermission, metadataTemplateService, sequencingObjectService, analysesListingService, messageSourceMock);
}

Example 3 with SampleService

use of ca.corefacility.bioinformatics.irida.service.sample.SampleService in project irida by phac-nml.

the class ProjectSamplesControllerTest method setUp.

@Before
public void setUp() {
    projectService = mock(ProjectService.class);
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    projectUtils = mock(ProjectControllerUtils.class);
    messageSource = mock(MessageSource.class);
    controller = new ProjectSamplesController(projectService, sampleService, sequencingObjectService, projectUtils, messageSource);
    user.setId(1L);
    mockSidebarInfo();
}

Example 4 with SampleService

use of ca.corefacility.bioinformatics.irida.service.sample.SampleService in project irida by phac-nml.

the class ProjectsControllerTest method setUp.

@Before
public void setUp() {
    projectService = mock(ProjectService.class);
    sampleService = mock(SampleService.class);
    userService = mock(UserService.class);
    projectRemoteService = mock(ProjectRemoteService.class);
    cartController = mock(CartController.class);
    taxonomyService = mock(TaxonomyService.class);
    projectUtils = mock(ProjectControllerUtils.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    messageSource = mock(MessageSource.class);
    controller = new ProjectsController(projectService, sampleService, userService, projectRemoteService, projectUtils, taxonomyService, remoteApiService, workflowsService, cartController, updateSamplePermission, messageSource);
    user.setId(1L);
    mockSidebarInfo();
}

Example 5 with SampleService

use of ca.corefacility.bioinformatics.irida.service.sample.SampleService in project irida by phac-nml.

the class SamplesControllerTest method setUp.

@Before
public void setUp() {
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    projectService = mock(ProjectService.class);
    metadataTemplateService = mock(MetadataTemplateService.class);
    messageSource = mock(MessageSource.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    readSamplePermission = mock(ReadSamplePermission.class);
    controller = new SamplesController(sampleService, projectService, sequencingObjectService, updateSamplePermission, metadataTemplateService, messageSource);
}