Examples with ResearcherUrls org.orcid.jaxb.model.message.ResearcherUrls used on opensource projects

Example 1 with ResearcherUrls

use of org.orcid.jaxb.model.message.ResearcherUrls in project ORCID-Source by ORCID.

the class OrcidJaxbCopyManagerImpl method copyUpdatedResearcherUrlPreservingVisbility.

@Override
public void copyUpdatedResearcherUrlPreservingVisbility(OrcidBio existing, OrcidBio updated) {
    if (updated.getResearcherUrls() == null) {
        return;
    }
    ResearcherUrls existingResearcherUrls = existing.getResearcherUrls();
    ResearcherUrls updatedResearcherUrls = updated.getResearcherUrls();
    Visibility existingVisibility = (existingResearcherUrls != null && existingResearcherUrls.getVisibility() != null) ? existingResearcherUrls.getVisibility() : OrcidVisibilityDefaults.RESEARCHER_URLS_DEFAULT.getVisibility();
    Visibility updatedVisibility = (updatedResearcherUrls != null && updatedResearcherUrls.getVisibility() != null) ? updatedResearcherUrls.getVisibility() : existingVisibility;
    // now visibility has been preserved, overwrite the content
    updatedResearcherUrls.setVisibility(updatedVisibility);
    existing.setResearcherUrls(updatedResearcherUrls);
}

Example 2 with ResearcherUrls

use of org.orcid.jaxb.model.message.ResearcherUrls in project ORCID-Source by ORCID.

the class RegistrationControllerTest method createBasicProfile.

protected OrcidProfile createBasicProfile() {
    OrcidProfile profile = new OrcidProfile();
    profile.setPassword("password");
    profile.setVerificationCode("1234");
    profile.setSecurityQuestionAnswer("random answer");
    OrcidBio bio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new Email("will@semantico.com"));
    bio.setContactDetails(contactDetails);
    profile.setOrcidBio(bio);
    PersonalDetails personalDetails = new PersonalDetails();
    bio.setPersonalDetails(personalDetails);
    personalDetails.setGivenNames(new GivenNames("Will"));
    personalDetails.setFamilyName(new FamilyName("Simpson"));
    bio.setBiography(new Biography("Will is a software developer"));
    ResearcherUrls researcherUrls = new ResearcherUrls();
    bio.setResearcherUrls(researcherUrls);
    researcherUrls.getResearcherUrl().add(new ResearcherUrl(new Url("http://www.wjrs.co.uk"), null));
    OrcidWorks orcidWorks = new OrcidWorks();
    profile.setOrcidWorks(orcidWorks);
    return profile;
}

Example 3 with ResearcherUrls

use of org.orcid.jaxb.model.message.ResearcherUrls in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method setBio.

private void setBio(OrcidProfile profile, Visibility defaultVisibility) {
    OrcidBio bio = new OrcidBio();
    Biography biography = new Biography("This is my biography");
    if (defaultVisibility != null) {
        biography.setVisibility(defaultVisibility);
    }
    bio.setBiography(biography);
    ContactDetails contactDetails = new ContactDetails();
    Address address = new Address();
    address.setCountry(new Country(Iso3166Country.US));
    if (defaultVisibility != null) {
        address.getCountry().setVisibility(defaultVisibility);
    }
    contactDetails.setAddress(address);
    List<Email> emails = new ArrayList<Email>();
    Email email = new Email();
    email.setPrimary(true);
    email.setValue(System.currentTimeMillis() + "@test.orcid.org");
    emails.add(email);
    contactDetails.setEmail(emails);
    bio.setContactDetails(contactDetails);
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId = new ExternalIdentifier();
    extId.setExternalIdCommonName(new ExternalIdCommonName("common-name"));
    extId.setExternalIdReference(new ExternalIdReference("ext-id-reference"));
    extId.setExternalIdUrl(new ExternalIdUrl("http://orcid.org/ext-id"));
    extIds.getExternalIdentifier().add(extId);
    if (defaultVisibility != null) {
        extIds.setVisibility(defaultVisibility);
    }
    bio.setExternalIdentifiers(extIds);
    Keywords keywords = new Keywords();
    Keyword keyword = new Keyword();
    keyword.setContent("k1");
    keywords.getKeyword().add(keyword);
    if (defaultVisibility != null) {
        keywords.setVisibility(defaultVisibility);
    }
    bio.setKeywords(keywords);
    PersonalDetails personalDetails = new PersonalDetails();
    personalDetails.setCreditName(new CreditName("credit-name"));
    personalDetails.setGivenNames(new GivenNames("given-names"));
    personalDetails.setFamilyName(new FamilyName("family-name"));
    OtherNames otherNames = new OtherNames();
    OtherName otherName = new OtherName();
    otherName.setContent("o1");
    otherNames.getOtherName().add(otherName);
    if (defaultVisibility != null) {
        otherNames.setVisibility(defaultVisibility);
    }
    personalDetails.setOtherNames(otherNames);
    bio.setPersonalDetails(personalDetails);
    ResearcherUrls researcherUrls = new ResearcherUrls();
    ResearcherUrl researcherUrl = new ResearcherUrl();
    researcherUrl.setUrl(new Url("http://orcid.org/researcher-url-1"));
    researcherUrl.setUrlName(new UrlName("url-name-1"));
    researcherUrls.getResearcherUrl().add(researcherUrl);
    if (defaultVisibility != null) {
        researcherUrls.setVisibility(defaultVisibility);
    }
    bio.setResearcherUrls(researcherUrls);
    profile.setOrcidBio(bio);
}

Example 4 with ResearcherUrls

use of org.orcid.jaxb.model.message.ResearcherUrls in project ORCID-Source by ORCID.

the class OrcidApiAuthorizationSecurityAspect method visibilityResponseFilter.

@AfterReturning(pointcut = "@annotation(accessControl)", returning = "response")
public void visibilityResponseFilter(Response response, AccessControl accessControl) {
    if (accessControl.requestComesFromInternalApi()) {
        return;
    }
    Object entity = response.getEntity();
    if (entity != null && OrcidMessage.class.isAssignableFrom(entity.getClass())) {
        OrcidMessage orcidMessage = (OrcidMessage) entity;
        // If it is search results, don't filter them, just return them
        if (orcidMessage.getOrcidSearchResults() != null) {
            return;
        }
        // get the client id
        Object authentication = getAuthentication();
        Set<Visibility> visibilities = new HashSet<Visibility>();
        if (allowAnonymousAccess((Authentication) authentication, accessControl)) {
            visibilities.add(Visibility.PUBLIC);
        } else {
            visibilities = permissionChecker.obtainVisibilitiesForAuthentication(getAuthentication(), accessControl.requiredScope(), orcidMessage);
        }
        // If the message contains a bio, and the given name is filtered, restore it as an empty space
        boolean setEmptyGivenNameIfFiltered = false;
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile() != null && orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                setEmptyGivenNameIfFiltered = true;
            }
        }
        ScopePathType requiredScope = accessControl.requiredScope();
        // If the required scope is */read-limited or */update
        if (isUpdateOrReadScope(requiredScope)) {
            // if it should be able to
            if (OrcidOAuth2Authentication.class.isAssignableFrom(authentication.getClass())) {
                OrcidOAuth2Authentication orcidAuth = (OrcidOAuth2Authentication) getAuthentication();
                OAuth2Request authorization = orcidAuth.getOAuth2Request();
                String clientId = authorization.getClientId();
                // #1: Get the user orcid
                String userOrcid = getUserOrcidFromOrcidMessage(orcidMessage);
                // #2: Evaluate the scope to know which field to filter
                boolean allowWorks = false;
                boolean allowFunding = false;
                boolean allowAffiliations = false;
                // Get the update equivalent scope, if it is reading, but,
                // doesnt have the read permissions, check if it have the
                // update permissions
                ScopePathType equivalentUpdateScope = getEquivalentUpdateScope(requiredScope);
                if (requiredScope.equals(ScopePathType.READ_LIMITED)) {
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.ORCID_WORKS_READ_LIMITED.getContent(), ScopePathType.ORCID_WORKS_UPDATE.getContent()))
                        allowWorks = true;
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.FUNDING_READ_LIMITED.getContent(), ScopePathType.FUNDING_UPDATE.getContent()))
                        allowFunding = true;
                    if (hasScopeEnabled(clientId, userOrcid, ScopePathType.AFFILIATIONS_READ_LIMITED.getContent(), ScopePathType.AFFILIATIONS_UPDATE.getContent()))
                        allowAffiliations = true;
                } else if (requiredScope.equals(ScopePathType.ORCID_WORKS_UPDATE) || requiredScope.equals(ScopePathType.ORCID_WORKS_READ_LIMITED)) {
                    // works
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private works
                        allowWorks = true;
                } else if (requiredScope.equals(ScopePathType.FUNDING_UPDATE) || requiredScope.equals(ScopePathType.FUNDING_READ_LIMITED)) {
                    // funding
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private funding
                        allowFunding = true;
                } else if (requiredScope.equals(ScopePathType.AFFILIATIONS_UPDATE) || requiredScope.equals(ScopePathType.AFFILIATIONS_READ_LIMITED)) {
                    // affiliations
                    if (hasScopeEnabled(clientId, userOrcid, requiredScope.getContent(), equivalentUpdateScope == null ? null : equivalentUpdateScope.getContent()))
                        // If so, allow him to see private affiliations
                        allowAffiliations = true;
                }
                visibilityFilter.filter(orcidMessage, clientId, allowWorks, allowFunding, allowAffiliations, visibilities.toArray(new Visibility[visibilities.size()]));
            } else {
                visibilityFilter.filter(orcidMessage, null, false, false, false, visibilities.toArray(new Visibility[visibilities.size()]));
            }
        } else {
            visibilityFilter.filter(orcidMessage, null, false, false, false, visibilities.toArray(new Visibility[visibilities.size()]));
        }
        // If the given name was set at the beginning and now is filtered, it means we should restore it as an empty field
        if (setEmptyGivenNameIfFiltered) {
            if (orcidMessage.getOrcidProfile() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio() == null) {
                    orcidMessage.getOrcidProfile().setOrcidBio(new OrcidBio());
                }
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() == null) {
                    orcidMessage.getOrcidProfile().getOrcidBio().setPersonalDetails(new PersonalDetails());
                }
            }
        }
        // Filter given or family names visibility
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() != null) {
                    if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getGivenNames() != null) {
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getGivenNames().setVisibility(null);
                    } else {
                        // Null given names could break client integrations, so, lets return an empty string
                        GivenNames empty = new GivenNames();
                        empty.setContent(StringUtils.EMPTY);
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().setGivenNames(empty);
                    }
                    if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getFamilyName() != null) {
                        orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getFamilyName().setVisibility(null);
                    }
                }
            }
        }
        // replace section visibilities now we may have filtered items
        if (orcidMessage.getOrcidProfile() != null) {
            if (orcidMessage.getOrcidProfile().getOrcidBio() != null) {
                if (orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails() != null) {
                    OtherNames n = orcidMessage.getOrcidProfile().getOrcidBio().getPersonalDetails().getOtherNames();
                    if (n != null) {
                        n.setVisibility(getMostFromCollection(n.getOtherName()));
                    }
                }
                ExternalIdentifiers ids = orcidMessage.getOrcidProfile().getOrcidBio().getExternalIdentifiers();
                if (ids != null) {
                    ids.setVisibility(getMostFromCollection(ids.getExternalIdentifier()));
                }
                Keywords kws = orcidMessage.getOrcidProfile().getOrcidBio().getKeywords();
                if (kws != null) {
                    kws.setVisibility(getMostFromCollection(kws.getKeyword()));
                }
                ResearcherUrls urls = orcidMessage.getOrcidProfile().getOrcidBio().getResearcherUrls();
                if (urls != null) {
                    urls.setVisibility(getMostFromCollection(urls.getResearcherUrl()));
                }
            }
        }
    }
}

Example 5 with ResearcherUrls

use of org.orcid.jaxb.model.message.ResearcherUrls in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testDefaultVisibilityForItemsAppliedOnUpdate.

@Test
@Transactional
@Rollback(true)
public void testDefaultVisibilityForItemsAppliedOnUpdate() {
    OrcidProfile profile = createBasicProfile();
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setCreationMethod(CreationMethod.DIRECT);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setOrcidHistory(orcidHistory);
    Keyword k = new Keyword("word", null);
    Keywords kk = new Keywords();
    kk.getKeyword().add(k);
    kk.setVisibility(Visibility.LIMITED);
    ResearcherUrl r = new ResearcherUrl(new Url("http://whatever.com"), null);
    ResearcherUrls rr = new ResearcherUrls();
    rr.getResearcherUrl().add(r);
    rr.setVisibility(Visibility.LIMITED);
    ExternalIdentifier i = new ExternalIdentifier(null);
    i.setExternalIdReference(new ExternalIdReference("ref"));
    i.setExternalIdCommonName(new ExternalIdCommonName("cn"));
    ExternalIdentifiers ii = new ExternalIdentifiers();
    ii.getExternalIdentifier().add(i);
    ii.setVisibility(Visibility.LIMITED);
    OtherNames oo = new OtherNames();
    oo.addOtherName("other", null);
    oo.setVisibility(Visibility.LIMITED);
    profile.getOrcidBio().setKeywords(kk);
    profile.getOrcidBio().setResearcherUrls(rr);
    profile.getOrcidBio().setExternalIdentifiers(ii);
    profile.getOrcidBio().getPersonalDetails().setOtherNames(oo);
    // Create the profile
    profile = orcidProfileManager.createOrcidProfile(profile, true, false);
    Preferences preferences = new Preferences();
    preferences.setSendChangeNotifications(new SendChangeNotifications(true));
    preferences.setSendOrcidNews(new SendOrcidNews(true));
    // Default visibility for user will be LIMITED
    preferences.setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    preferences.setNotificationsEnabled(DefaultPreferences.NOTIFICATIONS_ENABLED);
    preferences.setSendEmailFrequencyDays(DefaultPreferences.SEND_EMAIL_FREQUENCY_DAYS);
    preferences.setSendMemberUpdateRequests(DefaultPreferences.SEND_MEMBER_UPDATE_REQUESTS);
    OrcidInternal internal = new OrcidInternal();
    internal.setPreferences(preferences);
    profile.setOrcidInternal(internal);
    profile.getOrcidInternal().getPreferences().setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.LIMITED));
    // Claim the profile
    profile = orcidProfileManager.updateOrcidProfile(profile);
    // now attempt to alter privacy.  It should fail as record has been claimed.
    profile.getOrcidBio().getKeywords().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getResearcherUrls().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getExternalIdentifiers().setVisibility(Visibility.PUBLIC);
    profile.getOrcidBio().getPersonalDetails().getOtherNames().setVisibility(Visibility.PUBLIC);
    profile = orcidProfileManager.updateOrcidProfile(profile);
    assertEquals("word", profile.getOrcidBio().getKeywords().getKeyword().iterator().next().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getKeywords().getKeyword().iterator().next().getVisibility());
    assertEquals(new Url("http://whatever.com"), profile.getOrcidBio().getResearcherUrls().getResearcherUrl().iterator().next().getUrl());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getResearcherUrls().getResearcherUrl().iterator().next().getVisibility());
    assertEquals("cn", profile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getExternalIdCommonName().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getVisibility());
    assertEquals("other", profile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().iterator().next().getContent());
    assertEquals(Visibility.LIMITED, profile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().iterator().next().getVisibility());
}