Examples with ModelQueryResults ambit2.core.data.model.ModelQueryResults used on opensource projects

Example 1 with ModelQueryResults

use of ambit2.core.data.model.ModelQueryResults in project ambit-mirror by ideaconsult.

the class ModelResource method createCallable.

@Override
protected CallableQueryProcessor createCallable(Form form, ModelQueryResults model) throws ResourceException {
    try {
        readVariables(model);
        Object token = getToken();
        final ModelPredictor thepredictor = ModelResource.getPredictor(model, getRequest());
        if (model.getContentMediaType().equals(AlgorithmFormat.WWW_FORM.getMediaType())) {
            if (thepredictor instanceof ExpertModelpredictor)
                return new CallableModelPredictor<IStructureRecord, ExpertModelpredictor, Object>(form, getRequest().getRootRef(), getContext(), (ExpertModelpredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo()) {

                    @Override
                    protected void processForm(Reference applicationRootReference, Form form) {
                        super.processForm(applicationRootReference, form);
                        ((ExpertModelpredictor) thepredictor).setValue(form.getFirstValue("value"));
                    }
                };
            else
                return new CallableModelPredictor<IStructureRecord, ModelPredictor, Object>(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.WEKA.getMediaType())) {
            return // reads Instances, instead of IStructureRecord
            new CallableWekaPredictor<Object, Object>(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        /*
				 * } else if (model.getContentMediaType().equals(
				 * 
				 * AlgorithmFormat.WAFFLES_JSON.getMediaType())) { return new
				 * CallableWafflesPredictor(form, getRequest() .getRootRef(),
				 * getContext(), (WafflesPredictor) thepredictor,
				 * token,getRequest().getResourceRef().toString());
				 */
        } else if (model.getContentMediaType().equals(AlgorithmFormat.COVERAGE_SERIALIZED.getMediaType())) {
            if (model.getPredictors().size() == 0) {
                // based AD
                if (thepredictor instanceof FingerprintsPredictor)
                    return new CallableModelPredictor<IStructureRecord, FingerprintsPredictor, Object>(form, getRequest().getRootRef(), getContext(), (FingerprintsPredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
                else
                    throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, String.format("Not supported %s", thepredictor.getClass().getName()));
            } else {
                return new CallableModelPredictor(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
            /*
					 * return new CallableWekaPredictor<DataCoverage>( //reads
					 * Instances, instead of IStructureRecord form,
					 * getRequest().getRootRef(), getContext(), predictor) ;
					 */
            }
        } else if (model.getContentMediaType().equals(AlgorithmFormat.Structure2D.getMediaType())) {
            return new CallableStructureOptimizer(form, getRequest().getRootRef(), getContext(), (Structure2DProcessor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.MOPAC.getMediaType())) {
            return new CallableStructureOptimizer(form, getRequest().getRootRef(), getContext(), (StructureProcessor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.TAUTOMERS.getMediaType())) {
            return new CallableTautomersGenerator(form, getRequest().getRootRef(), getContext(), (TautomersGenerator) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.JAVA_CLASS.getMediaType())) {
            return new CallableDescriptorCalculator(form, getRequest().getRootRef(), getContext(), (DescriptorPredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else
            throw new ResourceException(Status.CLIENT_ERROR_UNSUPPORTED_MEDIA_TYPE, model.getContentMediaType());
    } catch (ResourceException x) {
        throw x;
    } catch (Exception x) {
        throw new ResourceException(Status.SERVER_ERROR_INTERNAL, x.getMessage(), x);
    } finally {
    }
}

Example 2 with ModelQueryResults

use of ambit2.core.data.model.ModelQueryResults in project ambit-mirror by ideaconsult.

the class ModelTextReporter method processItem.

@Override
public Object processItem(ModelQueryResults model) throws AmbitException {
    try {
        ModelPredictor predictor = ModelResource.getPredictor(model, request);
        getOutput().write(predictor.toString());
        return null;
    } catch (AmbitException x) {
        throw x;
    } catch (Exception x) {
        throw new AmbitException(x);
    }
}

Example 3 with ModelQueryResults

use of ambit2.core.data.model.ModelQueryResults in project ambit-mirror by ideaconsult.

the class ModelImageReporter method processItem.

@Override
public Object processItem(ModelQueryResults model) throws Exception {
    ModelPredictor predictor = ModelResource.getPredictor(model, request);
    String resultsURI = String.format("%s/%s", modelURIReporter.getURI(model), OpenTox.URI.feature);
    setOutput(getImage(predictor, resultsURI));
    return model;
}

Example 4 with ModelQueryResults

use of ambit2.core.data.model.ModelQueryResults in project ambit-mirror by ideaconsult.

the class ModelJSONReporter method parseContent.

protected void parseContent(ModelQueryResults model) {
    ObjectInputStream ois = null;
    try {
        Form form = new Form(model.getContent());
        InputStream in = new ByteArrayInputStream(Base64.decode(form.getFirstValue("model")));
        ois = new ObjectInputStream(in);
        Object o = ois.readObject();
        if (o == null)
            throw new ResourceException(Status.CLIENT_ERROR_NOT_FOUND, String.format("Error when reading model %s", model.getName()));
        List<IEvaluation<String>> e = new ArrayList<IEvaluation<String>>();
        for (EVType evt : EVType.values()) {
            String[] evals = form.getValuesArray(evt.name());
            for (int i = 0; i < evals.length; i++) {
                EvaluationStats<String> stats = new EvaluationStats<String>(evt, evals[i]);
                for (EVStatsType evst : EVStatsType.values()) {
                    Object value = form.getFirstValue(evt.name() + "_" + evst.name());
                    if (value == null)
                        continue;
                    try {
                        stats.getStats().put(evst, Double.parseDouble(value.toString()));
                    } catch (Exception x) {
                    }
                }
                e.add(stats);
            }
        }
        if (e.size() == 0)
            model.setEvaluation(null);
        else
            model.setEvaluation(e);
    } catch (Exception x) {
    } finally {
        try {
            ois.close();
        } catch (Exception x) {
        }
    }
}

Example 5 with ModelQueryResults

use of ambit2.core.data.model.ModelQueryResults in project ambit-mirror by ideaconsult.

the class PropertyModelResource method createQuery.

@Override
protected IQueryRetrieval<Property> createQuery(Context context, Request request, Response response) throws ResourceException {
    Form form = request.getResourceRef().getQueryAsForm();
    try {
        headless = Boolean.parseBoolean(form.getFirstValue("headless"));
    } catch (Exception x) {
        headless = false;
    }
    ModelQueryResults model = new ModelQueryResults();
    try {
        model.setId(Integer.parseInt(getRequest().getAttributes().get(MLResources.model_resourcekey).toString()));
    } catch (Exception x) {
        model.setId(-1);
        if ("null".equals(getRequest().getAttributes().get(MLResources.model_resourcekey).toString()))
            model = null;
        else
            model.setName(getRequest().getAttributes().get(MLResources.model_resourcekey).toString());
    }
    ModelTemplates query = new ModelTemplates();
    try {
        query.setValue(Reference.decode(getRequest().getAttributes().get(resourceKey).toString()));
    } catch (Exception x) {
        query.setValue(null);
    }
    query.setFieldname(model);
    return query;
}