Examples with SmallButton beast.app.draw.SmallButton used on opensource projects

Example 1 with SmallButton

use of beast.app.draw.SmallButton in project beast2 by CompEvol.

the class AlignmentListInputEditor method createAddRemoveSplitButtons.

private JComponent createAddRemoveSplitButtons() {
    Box buttonBox = Box.createHorizontalBox();
    addButton = new SmallButton("+", true, SmallButton.ButtonType.square);
    addButton.setName("+");
    addButton.setToolTipText("Add item to the list");
    addButton.addActionListener(e -> addItem());
    buttonBox.add(Box.createHorizontalStrut(STRUT_SIZE));
    buttonBox.add(addButton);
    buttonBox.add(Box.createHorizontalStrut(STRUT_SIZE));
    delButton = new SmallButton("-", true, SmallButton.ButtonType.square);
    delButton.setName("-");
    delButton.setToolTipText("Delete selected items from the list");
    delButton.addActionListener(e -> {
        if (doc.hasLinkedAtLeastOnce) {
            JOptionPane.showMessageDialog(null, "Cannot delete partition while parameters are linked");
            return;
        }
        delItem();
    });
    buttonBox.add(delButton);
    buttonBox.add(Box.createHorizontalStrut(STRUT_SIZE));
    replaceButton = new SmallButton("r", true, SmallButton.ButtonType.square);
    replaceButton.setName("r");
    replaceButton.setToolTipText("Replace alignment by one loaded from file");
    replaceButton.addActionListener(e -> replaceItem());
    buttonBox.add(Box.createHorizontalStrut(STRUT_SIZE));
    buttonBox.add(replaceButton);
    buttonBox.add(Box.createHorizontalStrut(STRUT_SIZE));
    splitButton = new JButton("Split");
    splitButton.setName("Split");
    splitButton.setToolTipText("Split alignment into partitions, for example, codon positions");
    splitButton.addActionListener(e -> splitItem());
    buttonBox.add(splitButton);
    buttonBox.add(Box.createHorizontalGlue());
    return buttonBox;
}

Example 2 with SmallButton

use of beast.app.draw.SmallButton in project beast2 by CompEvol.

the class PriorListInputEditor method init.

@Override
public void init(Input<?> input, BEASTInterface beastObject, int itemNr, ExpandOption isExpandOption, boolean addButtons) {
    List<?> list = (List<?>) input.get();
    Collections.sort(list, (Object o1, Object o2) -> {
        if (o1 instanceof BEASTInterface && o2 instanceof BEASTInterface) {
            String d1 = ((BEASTInterface) o1).getID();
            String id2 = ((BEASTInterface) o2).getID();
            // first the tree priors
            if (o1 instanceof TreeDistribution) {
                if (o2 instanceof TreeDistribution) {
                    TreeInterface tree1 = ((TreeDistribution) o1).treeInput.get();
                    if (tree1 == null) {
                        tree1 = ((TreeDistribution) o1).treeIntervalsInput.get().treeInput.get();
                    }
                    TreeInterface tree2 = ((TreeDistribution) o2).treeInput.get();
                    if (tree2 == null) {
                        tree2 = ((TreeDistribution) o2).treeIntervalsInput.get().treeInput.get();
                    }
                    return d1.compareTo(id2);
                } else {
                    return -1;
                }
            } else if (o1 instanceof MRCAPrior) {
                // last MRCA priors
                if (o2 instanceof MRCAPrior) {
                    return d1.compareTo(id2);
                } else {
                    return 1;
                }
            } else {
                if (o2 instanceof TreeDistribution) {
                    return 1;
                }
                if (o2 instanceof MRCAPrior) {
                    return -1;
                }
                if (o1 instanceof Prior) {
                    d1 = ((Prior) o1).getParameterName();
                }
                if (o2 instanceof Prior) {
                    id2 = ((Prior) o2).getParameterName();
                }
                return d1.compareTo(id2);
            }
        }
        return 0;
    });
    rangeButtons = new ArrayList<>();
    taxonButtons = new ArrayList<>();
    // m_buttonStatus = ButtonStatus.NONE;
    super.init(input, beastObject, itemNr, isExpandOption, addButtons);
    if (beastObject instanceof BeautiPanelConfig) {
        BeautiPanelConfig config = (BeautiPanelConfig) beastObject;
        if (config.parentBEASTObjects != null && config.parentBEASTObjects.size() > 0 && config.parentBEASTObjects.get(0).getID().equals("speciescoalescent")) {
            m_buttonStatus = ButtonStatus.NONE;
        }
    }
    if (m_buttonStatus == ButtonStatus.ALL || m_buttonStatus == ButtonStatus.ADD_ONLY) {
        addButton = new SmallButton("+ Add Prior", true);
        addButton.setName("addItem");
        addButton.setToolTipText("Add new prior (like an MRCA-prior) to the list of priors");
        addButton.addActionListener(e -> {
            addItem();
        });
        buttonBox.add(addButton);
        buttonBox.add(Box.createHorizontalGlue());
    }
}

Example 3 with SmallButton

use of beast.app.draw.SmallButton in project beast2 by CompEvol.

the class MRCAPriorInputEditor method init.

@Override
public void init(Input<?> input, BEASTInterface beastObject, final int listItemNr, ExpandOption isExpandOption, boolean addButtons) {
    m_bAddButtons = addButtons;
    m_input = input;
    m_beastObject = beastObject;
    this.itemNr = listItemNr;
    Box itemBox = Box.createHorizontalBox();
    MRCAPrior prior = (MRCAPrior) beastObject;
    String text = prior.getID();
    JButton taxonButton = new JButton(text);
    // taxonButton.setMinimumSize(Base.PREFERRED_SIZE);
    // taxonButton.setPreferredSize(Base.PREFERRED_SIZE);
    itemBox.add(taxonButton);
    taxonButton.addActionListener(e -> {
        List<?> list = (List<?>) m_input.get();
        MRCAPrior prior2 = (MRCAPrior) list.get(itemNr);
        try {
            TaxonSet taxonset = prior2.taxonsetInput.get();
            List<Taxon> originalTaxa = new ArrayList<>();
            originalTaxa.addAll(taxonset.taxonsetInput.get());
            Set<Taxon> candidates = getTaxonCandidates(prior2);
            TaxonSetDialog dlg = new TaxonSetDialog(taxonset, candidates, doc);
            if (dlg.showDialog()) {
                if (dlg.taxonSet.taxonsetInput.get().size() == 0) {
                    JOptionPane.showMessageDialog(doc.beauti, "At least one taxon should be included in the taxon set", "Error specifying taxon set", JOptionPane.ERROR_MESSAGE);
                    taxonset.taxonsetInput.get().addAll(originalTaxa);
                    return;
                }
                prior2.taxonsetInput.setValue(dlg.taxonSet, prior2);
                int i = 1;
                String id = dlg.taxonSet.getID();
                while (doc.pluginmap.containsKey(dlg.taxonSet.getID()) && doc.pluginmap.get(dlg.taxonSet.getID()) != dlg.taxonSet) {
                    dlg.taxonSet.setID(id + i);
                    i++;
                }
                BEASTObjectPanel.addPluginToMap(dlg.taxonSet, doc);
                prior2.setID(dlg.taxonSet.getID() + ".prior");
            }
        } catch (Exception e1) {
            // TODO Auto-generated catch block
            e1.printStackTrace();
        }
        refreshPanel();
    });
    if (prior.distInput.getType() == null) {
        try {
            prior.distInput.setValue(new OneOnX(), prior);
            prior.distInput.setValue(null, prior);
        } catch (Exception e) {
        // TODO: handle exception
        }
    }
    List<BeautiSubTemplate> availableBEASTObjects = doc.getInputEditorFactory().getAvailableTemplates(prior.distInput, prior, null, doc);
    JComboBox<BeautiSubTemplate> comboBox = new JComboBox<>(availableBEASTObjects.toArray(new BeautiSubTemplate[] {}));
    comboBox.setName(text + ".distr");
    if (prior.distInput.get() != null) {
        String id = prior.distInput.get().getID();
        // id = BeautiDoc.parsePartition(id);
        id = id.substring(0, id.indexOf('.'));
        for (BeautiSubTemplate template : availableBEASTObjects) {
            if (template.classInput.get() != null && template.shortClassName.equals(id)) {
                comboBox.setSelectedItem(template);
            }
        }
    } else {
        comboBox.setSelectedItem(BeautiConfig.NULL_TEMPLATE);
    }
    comboBox.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            @SuppressWarnings("unchecked") JComboBox<BeautiSubTemplate> comboBox = (JComboBox<BeautiSubTemplate>) e.getSource();
            BeautiSubTemplate template = (BeautiSubTemplate) comboBox.getSelectedItem();
            List<?> list = (List<?>) m_input.get();
            MRCAPrior prior = (MRCAPrior) list.get(itemNr);
            // }
            try {
                // BEASTObject beastObject2 =
                template.createSubNet(new PartitionContext(""), prior, prior.distInput, true);
            } catch (Exception e1) {
                e1.printStackTrace();
            }
            refreshPanel();
        }
    });
    itemBox.add(comboBox);
    JCheckBox isMonophyleticdBox = new JCheckBox(doc.beautiConfig.getInputLabel(prior, prior.isMonophyleticInput.getName()));
    isMonophyleticdBox.setName(text + ".isMonophyletic");
    isMonophyleticdBox.setSelected(prior.isMonophyleticInput.get());
    isMonophyleticdBox.setToolTipText(prior.isMonophyleticInput.getHTMLTipText());
    isMonophyleticdBox.addActionListener(new MRCAPriorActionListener(prior));
    itemBox.add(isMonophyleticdBox);
    JButton deleteButton = new SmallButton("-", true);
    deleteButton.setToolTipText("Delete this calibration");
    deleteButton.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            Log.warning.println("Trying to delete a calibration");
            List<?> list = (List<?>) m_input.get();
            MRCAPrior prior = (MRCAPrior) list.get(itemNr);
            doc.disconnect(prior, "prior", "distribution");
            doc.disconnect(prior, "tracelog", "log");
            if (prior.onlyUseTipsInput.get()) {
                disableTipSampling(m_beastObject, doc);
            }
            doc.unregisterPlugin(prior);
            refreshPanel();
        }
    });
    itemBox.add(Box.createGlue());
    itemBox.add(deleteButton);
    add(itemBox);
}