Examples with GalaxyToolDataService ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy.GalaxyToolDataService used on opensource projects

Example 1 with GalaxyToolDataService

use of ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy.GalaxyToolDataService in project irida by phac-nml.

the class GalaxyToolDataServiceIT method setup.

/**
 * Sets up for tool data table tests.
 */
@Before
public void setup() {
    galaxyInstanceAdmin = localGalaxy.getGalaxyInstanceAdmin();
    ToolDataClient toolDataClient = galaxyInstanceAdmin.getToolDataClient();
    galaxyToolDataService = new GalaxyToolDataService(toolDataClient);
}

Example 2 with GalaxyToolDataService

use of ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy.GalaxyToolDataService in project irida by phac-nml.

the class PipelineControllerTest method setUp.

@Before
public void setUp() {
    referenceFileService = mock(ReferenceFileService.class);
    analysisSubmissionService = mock(AnalysisSubmissionService.class);
    workflowsService = mock(IridaWorkflowsService.class);
    projectService = mock(ProjectService.class);
    userService = mock(UserService.class);
    messageSource = mock(MessageSource.class);
    cartController = mock(CartController.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    namedParameterService = mock(WorkflowNamedParametersService.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    analysisSubmissionSampleProcessor = mock(AnalysisSubmissionSampleProcessor.class);
    galaxyToolDataService = mock(GalaxyToolDataService.class);
    controller = new PipelineController(sequencingObjectService, referenceFileService, analysisSubmissionService, workflowsService, projectService, userService, cartController, messageSource, namedParameterService, updateSamplePermission, analysisSubmissionSampleProcessor, galaxyToolDataService);
    when(messageSource.getMessage(any(), any(), any())).thenReturn("");
}