Examples with UpdateSamplePermission ca.corefacility.bioinformatics.irida.security.permissions.sample.UpdateSamplePermission used on opensource projects

Example 1 with UpdateSamplePermission

use of ca.corefacility.bioinformatics.irida.security.permissions.sample.UpdateSamplePermission in project irida by phac-nml.

the class PipelineControllerTest method setUp.

@Before
public void setUp() {
    referenceFileService = mock(ReferenceFileService.class);
    analysisSubmissionService = mock(AnalysisSubmissionService.class);
    workflowsService = mock(IridaWorkflowsService.class);
    projectService = mock(ProjectService.class);
    userService = mock(UserService.class);
    messageSource = mock(MessageSource.class);
    cartController = mock(CartController.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    namedParameterService = mock(WorkflowNamedParametersService.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    analysisSubmissionSampleProcessor = mock(AnalysisSubmissionSampleProcessor.class);
    galaxyToolDataService = mock(GalaxyToolDataService.class);
    controller = new PipelineController(sequencingObjectService, referenceFileService, analysisSubmissionService, workflowsService, projectService, userService, cartController, messageSource, namedParameterService, updateSamplePermission, analysisSubmissionSampleProcessor, galaxyToolDataService);
    when(messageSource.getMessage(any(), any(), any())).thenReturn("");
}

Example 2 with UpdateSamplePermission

use of ca.corefacility.bioinformatics.irida.security.permissions.sample.UpdateSamplePermission in project irida by phac-nml.

the class ProjectsControllerTest method setUp.

@Before
public void setUp() {
    projectService = mock(ProjectService.class);
    sampleService = mock(SampleService.class);
    userService = mock(UserService.class);
    projectRemoteService = mock(ProjectRemoteService.class);
    cartController = mock(CartController.class);
    taxonomyService = mock(TaxonomyService.class);
    projectUtils = mock(ProjectControllerUtils.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    messageSource = mock(MessageSource.class);
    controller = new ProjectsController(projectService, sampleService, userService, projectRemoteService, projectUtils, taxonomyService, remoteApiService, workflowsService, cartController, updateSamplePermission, messageSource);
    user.setId(1L);
    mockSidebarInfo();
}

Example 3 with UpdateSamplePermission

use of ca.corefacility.bioinformatics.irida.security.permissions.sample.UpdateSamplePermission in project irida by phac-nml.

the class SamplesControllerTest method setUp.

@Before
public void setUp() {
    sampleService = mock(SampleService.class);
    sequencingObjectService = mock(SequencingObjectService.class);
    projectService = mock(ProjectService.class);
    metadataTemplateService = mock(MetadataTemplateService.class);
    messageSource = mock(MessageSource.class);
    updateSamplePermission = mock(UpdateSamplePermission.class);
    readSamplePermission = mock(ReadSamplePermission.class);
    controller = new SamplesController(sampleService, projectService, sequencingObjectService, updateSamplePermission, metadataTemplateService, messageSource);
}

Example 4 with UpdateSamplePermission

use of ca.corefacility.bioinformatics.irida.security.permissions.sample.UpdateSamplePermission in project irida by phac-nml.

the class UpdateSamplePermissionTest method setUp.

@Before
public void setUp() {
    projectSampleJoinRepository = mock(ProjectSampleJoinRepository.class);
    projectOwnerPermission = mock(ProjectOwnerPermission.class);
    sampleRepository = mock(SampleRepository.class);
    updateSamplePermission = new UpdateSamplePermission(sampleRepository, projectOwnerPermission, projectSampleJoinRepository);
    Collection<GrantedAuthority> roles = new ArrayList<>();
    roles.add(Role.ROLE_USER);
    auth = new UsernamePasswordAuthenticationToken("fbristow", "password1", roles);
}