Examples with AnalysisRepository ca.corefacility.bioinformatics.irida.repositories.analysis.AnalysisRepository used on opensource projects

Example 1 with AnalysisRepository

use of ca.corefacility.bioinformatics.irida.repositories.analysis.AnalysisRepository in project irida by phac-nml.

the class SampleServiceImplTest method setUp.

@Before
public void setUp() {
    sampleRepository = mock(SampleRepository.class);
    psjRepository = mock(ProjectSampleJoinRepository.class);
    analysisRepository = mock(AnalysisRepository.class);
    ssoRepository = mock(SampleSequencingObjectJoinRepository.class);
    qcEntryRepository = mock(QCEntryRepository.class);
    sequencingObjectRepository = mock(SequencingObjectRepository.class);
    sampleGenomeAssemblyJoinRepository = mock(SampleGenomeAssemblyJoinRepository.class);
    ValidatorFactory factory = Validation.buildDefaultValidatorFactory();
    validator = factory.getValidator();
    sampleService = new SampleServiceImpl(sampleRepository, psjRepository, analysisRepository, ssoRepository, qcEntryRepository, sequencingObjectRepository, sampleGenomeAssemblyJoinRepository, userRepository, validator);
}

Example 2 with AnalysisRepository

use of ca.corefacility.bioinformatics.irida.repositories.analysis.AnalysisRepository in project irida by phac-nml.

the class CoverageFileProcessorTest method setup.

@Before
public void setup() {
    qcEntryRepository = mock(QCEntryRepository.class);
    analysisRepository = mock(AnalysisRepository.class);
    processor = new CoverageFileProcessor(qcEntryRepository, analysisRepository);
}

Example 3 with AnalysisRepository

use of ca.corefacility.bioinformatics.irida.repositories.analysis.AnalysisRepository in project irida by phac-nml.

the class AnalysisServiceTest method setUp.

@Before
public void setUp() {
    this.analysisRepository = mock(AnalysisRepository.class);
    this.analysisOutputFileRepository = mock(AnalysisOutputFileRepository.class);
    this.validator = mock(Validator.class);
    this.analysisService = new AnalysisServiceImpl(analysisRepository, analysisOutputFileRepository, validator);
}