Examples with SequencingRunService ca.corefacility.bioinformatics.irida.service.SequencingRunService used on opensource projects

Example 1 with SequencingRunService

use of ca.corefacility.bioinformatics.irida.service.SequencingRunService in project irida by phac-nml.

the class SequenceFileControllerTest method setUp.

@Before
public void setUp() {
    sequencingRunService = mock(SequencingRunService.class);
    analysisService = mock(AnalysisService.class);
    objectService = mock(SequencingObjectService.class);
    controller = new SequenceFileController(objectService, sequencingRunService, analysisService);
    Path path = Paths.get(FILE_PATH);
    SequenceFile file = new SequenceFile(path);
    file.setId(FILE_ID);
    SingleEndSequenceFile seqObject = new SingleEndSequenceFile(file);
    when(objectService.read(anyLong())).thenReturn(seqObject);
}

Example 2 with SequencingRunService

use of ca.corefacility.bioinformatics.irida.service.SequencingRunService in project irida by phac-nml.

the class SequencingRunControllerTest method setup.

@Before
public void setup() {
    sequencingRunService = mock(SequencingRunService.class);
    objectService = mock(SequencingObjectService.class);
    messageSource = mock(MessageSource.class);
    controller = new SequencingRunController(sequencingRunService, objectService, messageSource);
}