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Example 96 with Message

use of ca.uhn.hl7v2.model.Message in project nifi by apache.

the class ExtractHL7Attributes method onTrigger.

@Override
public void onTrigger(final ProcessContext context, final ProcessSession session) throws ProcessException {
    FlowFile flowFile = session.get();
    if (flowFile == null) {
        return;
    }
    final Charset charset = Charset.forName(context.getProperty(CHARACTER_SET).evaluateAttributeExpressions(flowFile).getValue());
    final Boolean useSegmentNames = context.getProperty(USE_SEGMENT_NAMES).asBoolean();
    final Boolean parseSegmentFields = context.getProperty(PARSE_SEGMENT_FIELDS).asBoolean();
    final Boolean skipValidation = context.getProperty(SKIP_VALIDATION).asBoolean();
    final String inputVersion = context.getProperty(HL7_INPUT_VERSION).getValue();
    final byte[] buffer = new byte[(int) flowFile.getSize()];
    session.read(flowFile, new InputStreamCallback() {

        @Override
        public void process(final InputStream in) throws IOException {
            StreamUtils.fillBuffer(in, buffer);
        }
    });
    @SuppressWarnings("resource") final HapiContext hapiContext = new DefaultHapiContext();
    if (!inputVersion.equals("autodetect")) {
        hapiContext.setModelClassFactory(new CanonicalModelClassFactory(inputVersion));
    }
    if (skipValidation) {
        hapiContext.setValidationContext((ValidationContext) ValidationContextFactory.noValidation());
    }
    final PipeParser parser = hapiContext.getPipeParser();
    final String hl7Text = new String(buffer, charset);
    try {
        final Message message = parser.parse(hl7Text);
        final Map<String, String> attributes = getAttributes(message, useSegmentNames, parseSegmentFields);
        flowFile = session.putAllAttributes(flowFile, attributes);
        getLogger().debug("Added the following attributes for {}: {}", new Object[] { flowFile, attributes });
    } catch (final HL7Exception e) {
        getLogger().error("Failed to extract attributes from {} due to {}", new Object[] { flowFile, e });
        session.transfer(flowFile, REL_FAILURE);
        return;
    }
    session.transfer(flowFile, REL_SUCCESS);
}
Also used : FlowFile(org.apache.nifi.flowfile.FlowFile) PipeParser(ca.uhn.hl7v2.parser.PipeParser) Message(ca.uhn.hl7v2.model.Message) InputStream(java.io.InputStream) Charset(java.nio.charset.Charset) IOException(java.io.IOException) CanonicalModelClassFactory(ca.uhn.hl7v2.parser.CanonicalModelClassFactory) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) InputStreamCallback(org.apache.nifi.processor.io.InputStreamCallback) HL7Exception(ca.uhn.hl7v2.HL7Exception) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) HapiContext(ca.uhn.hl7v2.HapiContext)

Example 97 with Message

use of ca.uhn.hl7v2.model.Message in project camel by apache.

the class AckExpression method evaluate.

@Override
public Object evaluate(Exchange exchange) {
    Throwable t = exchange.getProperty(Exchange.EXCEPTION_CAUGHT, Throwable.class);
    Message msg = exchange.getIn().getBody(Message.class);
    try {
        HL7Exception hl7e = generateHL7Exception(t);
        AcknowledgmentCode code = acknowledgementCode;
        if (t != null && code == null) {
            code = AcknowledgmentCode.AE;
        }
        return msg.generateACK(code == null ? AcknowledgmentCode.AA : code, hl7e);
    } catch (Exception e) {
        throw ObjectHelper.wrapRuntimeCamelException(e);
    }
}
Also used : Message(ca.uhn.hl7v2.model.Message) HL7Exception(ca.uhn.hl7v2.HL7Exception) AcknowledgmentCode(ca.uhn.hl7v2.AcknowledgmentCode) HL7Exception(ca.uhn.hl7v2.HL7Exception)

Example 98 with Message

use of ca.uhn.hl7v2.model.Message in project camel by apache.

the class HL7DataFormat method marshal.

public void marshal(Exchange exchange, Object body, OutputStream outputStream) throws Exception {
    Message message = ExchangeHelper.convertToMandatoryType(exchange, Message.class, body);
    String charsetName = HL7Charset.getCharsetName(message, exchange);
    String encoded = HL7Converter.encode(message, parser);
    outputStream.write(encoded.getBytes(charsetName));
}
Also used : Message(ca.uhn.hl7v2.model.Message)

Example 99 with Message

use of ca.uhn.hl7v2.model.Message in project camel by apache.

the class HL7DataFormat method unmarshal.

public Object unmarshal(Exchange exchange, InputStream inputStream) throws Exception {
    byte[] body = ExchangeHelper.convertToMandatoryType(exchange, byte[].class, inputStream);
    String charsetName = HL7Charset.getCharsetName(body, guessCharsetName(body, exchange));
    String bodyAsString = new String(body, charsetName);
    Message message = HL7Converter.parse(bodyAsString, parser);
    // add MSH fields as message out headers
    Terser terser = new Terser(message);
    for (Map.Entry<String, String> entry : HEADER_MAP.entrySet()) {
        exchange.getOut().setHeader(entry.getKey(), terser.get(entry.getValue()));
    }
    exchange.getOut().setHeader(HL7_CONTEXT, hapiContext);
    exchange.getOut().setHeader(Exchange.CHARSET_NAME, charsetName);
    return message;
}
Also used : Message(ca.uhn.hl7v2.model.Message) Terser(ca.uhn.hl7v2.util.Terser) HashMap(java.util.HashMap) Map(java.util.Map)

Example 100 with Message

use of ca.uhn.hl7v2.model.Message in project camel by apache.

the class HL7MLLPEncoder method encode.

public void encode(IoSession session, Object message, ProtocolEncoderOutput out) throws Exception {
    if (message == null) {
        throw new IllegalArgumentException("Message to be encoded is null");
    } else if (message instanceof Exception) {
        // we cannot handle exceptions
        throw (Exception) message;
    }
    byte[] body;
    if (message instanceof Message) {
        body = ((Message) message).encode().getBytes(config.getCharset());
    } else if (message instanceof String) {
        body = ((String) message).getBytes(config.getCharset());
    } else if (message instanceof byte[]) {
        body = (byte[]) message;
    } else {
        throw new IllegalArgumentException("The message to encode is not a supported type: " + message.getClass().getCanonicalName());
    }
    // put the data into the byte buffer
    IoBuffer buf = IoBuffer.allocate(body.length + 3).setAutoExpand(true);
    buf.put((byte) config.getStartByte());
    buf.put(body);
    buf.put((byte) config.getEndByte1());
    buf.put((byte) config.getEndByte2());
    // flip the buffer so we can use it to write to the out stream
    buf.flip();
    LOG.debug("Encoded HL7 from {} to byte stream", message.getClass().getCanonicalName());
    out.write(buf);
}
Also used : Message(ca.uhn.hl7v2.model.Message) IoBuffer(org.apache.mina.core.buffer.IoBuffer)

Aggregations

Message (ca.uhn.hl7v2.model.Message)114 Test (org.junit.Test)82 BaseContextSensitiveTest (org.openmrs.test.BaseContextSensitiveTest)60 ORU_R01 (ca.uhn.hl7v2.model.v25.message.ORU_R01)30 Patient (org.openmrs.Patient)24 NK1 (ca.uhn.hl7v2.model.v25.segment.NK1)22 HL7Exception (ca.uhn.hl7v2.HL7Exception)20 QRD (ca.uhn.hl7v2.model.v24.segment.QRD)19 ArrayList (java.util.ArrayList)19 MockEndpoint (org.apache.camel.component.mock.MockEndpoint)18 ORUR01Handler (org.openmrs.hl7.handler.ORUR01Handler)15 Concept (org.openmrs.Concept)14 Obs (org.openmrs.Obs)14 Person (org.openmrs.Person)14 MSH (ca.uhn.hl7v2.model.v24.segment.MSH)13 ObsService (org.openmrs.api.ObsService)11 ADR_A19 (ca.uhn.hl7v2.model.v24.message.ADR_A19)9 MSA (ca.uhn.hl7v2.model.v24.segment.MSA)9 Encounter (org.openmrs.Encounter)9 Structure (ca.uhn.hl7v2.model.Structure)8