Examples with ORU_R01 ca.uhn.hl7v2.model.v25.message.ORU_R01 used on opensource projects

Example 1 with ORU_R01

use of ca.uhn.hl7v2.model.v25.message.ORU_R01 in project streamsx.health by IBMStreams.

the class ObxToSplMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<Observation> observations = new ArrayList<Observation>();
    if (message instanceof ORU_R01) {
        ORU_R01 oruMsg = (ORU_R01) message;
        String obxTs = "";
        String obxLocation = "";
        String sendingApp = "";
        String sendingFacility = "";
        try {
            MSH msh = oruMsg.getMSH();
            sendingApp = msh.getSendingApplication().encode();
            sendingFacility = msh.getSendingFacility().encode();
            List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
            for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
                ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
                OBR obr = order_OBSERVATION.getOBR();
                DTM ts = obr.getObservationDateTime();
                obxTs = ts.getValue();
                ORU_R01_PATIENT patient = result.getPATIENT();
                ORU_R01_VISIT visit = patient.getVISIT();
                PL location = visit.getPV1().getAssignedPatientLocation();
                obxLocation = location.encode();
                List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
                for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
                    parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
                }
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
        try {
            OBR obr = (OBR) oruMsg.get("OBR");
            DTM ts = obr.getObservationDateTime();
            obxTs = ts.getValue();
            Structure tmp = oruMsg.get("PV1");
            if (tmp != null) {
                PV1 pv1 = (PV1) tmp;
                PL location = pv1.getAssignedPatientLocation();
                obxLocation = location.encode();
            }
            Structure[] structures = oruMsg.getAll("OBX");
            for (Structure structure : structures) {
                parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
    }
    return (Iterable<T>) observations;
}

Example 2 with ORU_R01

use of ca.uhn.hl7v2.model.v25.message.ORU_R01 in project openmrs-core by openmrs.

the class ORUR01Handler method processMessage.

/**
 * Processes an ORU R01 event message
 *
 * @should create encounter and obs from hl7 message
 * @should create basic concept proposal
 * @should create concept proposal and with obs alongside
 * @should not create problem list observation with concept proposals
 * @should append to an existing encounter
 * @should create obs group for OBRs
 * @should create obs valueCodedName
 * @should fail on empty concept proposals
 * @should fail on empty concept answers
 * @should set value_Coded matching a boolean concept for obs if the answer is 0 or 1 and
 *         Question datatype is coded
 * @should set value as boolean for obs if the answer is 0 or 1 and Question datatype is Boolean
 * @should set value_Numeric for obs if Question datatype is Numeric and the answer is either 0
 *         or 1
 * @should set value_Numeric for obs if Question datatype is Numeric
 * @should fail if question datatype is coded and a boolean is not a valid answer
 * @should fail if question datatype is neither Boolean nor numeric nor coded
 * @should create an encounter and find the provider by identifier
 * @should create an encounter and find the provider by personId
 * @should create an encounter and find the provider by uuid
 * @should create an encounter and find the provider by providerId
 * @should fail if the provider name type code is not specified and is not a personId
 * @should understand form uuid if present
 * @should prefer form uuid over id if both are present
 * @should prefer form id if uuid is not found
 * @should set complex data for obs with complex concepts
 */
@Override
public Message processMessage(Message message) throws ApplicationException {
    if (!(message instanceof ORU_R01)) {
        throw new ApplicationException(Context.getMessageSourceService().getMessage("ORUR01.error.invalidMessage"));
    }
    log.debug("Processing ORU_R01 message");
    Message response;
    try {
        ORU_R01 oru = (ORU_R01) message;
        response = processORU_R01(oru);
    } catch (ClassCastException e) {
        log.warn("Error casting " + message.getClass().getName() + " to ORU_R01", e);
        throw new ApplicationException(Context.getMessageSourceService().getMessage("ORUR01.error.invalidMessageType ", new Object[] { message.getClass().getName() }, null), e);
    } catch (HL7Exception e) {
        log.warn("Error while processing ORU_R01 message", e);
        throw new ApplicationException(Context.getMessageSourceService().getMessage("ORUR01.error.WhileProcessing"), e);
    }
    log.debug("Finished processing ORU_R01 message");
    return response;
}

Example 3 with ORU_R01

use of ca.uhn.hl7v2.model.v25.message.ORU_R01 in project openmrs-core by openmrs.

the class HL7ServiceTest method resolveUserId_shouldReturnUserUsingUsername.

/**
 * @throws HL7Exception
 * @see HL7Service#resolveUserId(ca.uhn.hl7v2.model.v25.datatype.XCN)
 */
@Test
public void resolveUserId_shouldReturnUserUsingUsername() throws HL7Exception {
    HL7Service hl7service = Context.getHL7Service();
    // construct a message such that id Number at ORC is null
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "ORC|RE||||||||20080226102537|^butch\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    ORU_R01 oru = (ORU_R01) message;
    ORC orc = oru.getPATIENT_RESULT().getORDER_OBSERVATION().getORC();
    XCN xcn = orc.getEnteredBy(0);
    Integer userId = hl7service.resolveUserId(xcn);
    assertThat(userId, is(502));
}

Example 4 with ORU_R01

use of ca.uhn.hl7v2.model.v25.message.ORU_R01 in project openmrs-core by openmrs.

the class HL7ServiceTest method resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect.

/**
 * @throws HL7Exception
 * @see HL7Service#resolveLocationId(ca.uhn.hl7v2.model.v25.datatype.PL)
 */
@Test
public void resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect() throws HL7Exception {
    executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
    HL7Service hl7service = Context.getHL7Service();
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "PV1||O|99999^0^0^0&Unknown&0||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    ORU_R01 oru = (ORU_R01) message;
    PV1 pv1 = oru.getPATIENT_RESULT().getPATIENT().getVISIT().getPV1();
    Assert.assertNotNull("PV1 parsed as null", pv1);
    PL hl7Location = pv1.getAssignedPatientLocation();
    Integer locationId = hl7service.resolveLocationId(hl7Location);
    Assert.assertNull(locationId);
}

Example 5 with ORU_R01

use of ca.uhn.hl7v2.model.v25.message.ORU_R01 in project openmrs-core by openmrs.

the class HL7ServiceTest method getUuidFromIdentifiers_shouldFailIfMultipleDifferentUUIDsExistInIdentifiers.

/**
 * @throws HL7Exception
 * @see HL7Service#getUuidFromIdentifiers(null)
 */
@Test(expected = HL7Exception.class)
public void getUuidFromIdentifiers_shouldFailIfMultipleDifferentUUIDsExistInIdentifiers() throws HL7Exception {
    HL7Service hl7service = Context.getHL7Service();
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||2178037d-f86b-4f12-8d8b-be3ebc220022^^^UUID^v4~2178037d-f86b-4f12-8d8b-be3ebc220023^^^UUID^v4||||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    ORU_R01 oru = (ORU_R01) message;
    List<NK1> nk1List = new ORUR01Handler().getNK1List(oru);
    CX[] identifiers = nk1List.get(0).getNextOfKinAssociatedPartySIdentifiers();
    hl7service.getUuidFromIdentifiers(identifiers);
    Assert.fail("should have failed");
}