use of ca.uhn.hl7v2.model.v25.datatype.PL in project streamsx.health by IBMStreams.
the class ObxToSplMapper method messageToModel.
@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
ArrayList<Observation> observations = new ArrayList<Observation>();
if (message instanceof ORU_R01) {
ORU_R01 oruMsg = (ORU_R01) message;
String obxTs = "";
String obxLocation = "";
String sendingApp = "";
String sendingFacility = "";
try {
MSH msh = oruMsg.getMSH();
sendingApp = msh.getSendingApplication().encode();
sendingFacility = msh.getSendingFacility().encode();
List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
OBR obr = order_OBSERVATION.getOBR();
DTM ts = obr.getObservationDateTime();
obxTs = ts.getValue();
ORU_R01_PATIENT patient = result.getPATIENT();
ORU_R01_VISIT visit = patient.getVISIT();
PL location = visit.getPV1().getAssignedPatientLocation();
obxLocation = location.encode();
List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
}
}
} catch (HL7Exception e) {
if (TRACE.isDebugEnabled())
TRACE.log(TraceLevel.WARN, e);
}
try {
OBR obr = (OBR) oruMsg.get("OBR");
DTM ts = obr.getObservationDateTime();
obxTs = ts.getValue();
Structure tmp = oruMsg.get("PV1");
if (tmp != null) {
PV1 pv1 = (PV1) tmp;
PL location = pv1.getAssignedPatientLocation();
obxLocation = location.encode();
}
Structure[] structures = oruMsg.getAll("OBX");
for (Structure structure : structures) {
parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
}
} catch (HL7Exception e) {
if (TRACE.isDebugEnabled())
TRACE.log(TraceLevel.WARN, e);
}
}
return (Iterable<T>) observations;
}
use of ca.uhn.hl7v2.model.v25.datatype.PL in project openmrs-core by openmrs.
the class HL7ServiceImpl method resolveLocationId.
/**
* @param pl HL7 component of data type PL (person location) (see Ch 2.A.53)
* @return internal identifier of the specified location, or null if it is not found or
* ambiguous
*/
@Override
@Transactional(readOnly = true)
public Integer resolveLocationId(PL pl) throws HL7Exception {
// TODO: Get rid of hack that allows first component to be an integer
// location.location_id
String pointOfCare = pl.getPointOfCare().getValue();
String facility = pl.getFacility().getUniversalID().getValue();
// Care" as an internal openmrs location_id
try {
Integer locationId = Integer.valueOf(pointOfCare);
Location l = Context.getLocationService().getLocation(locationId);
if (l != null) {
return l.getLocationId();
}
} catch (Exception ex) {
if (facility == null) {
// throw an exception
throw new HL7Exception("Error trying to treat PL.pointOfCare '" + pointOfCare + "' as a location.location_id", ex);
}
}
// Treat the 4th component "Facility" as location.name
try {
Location l = Context.getLocationService().getLocation(facility);
if (l == null) {
log.debug("Couldn't find a location named '" + facility + "'");
}
return l == null ? null : l.getLocationId();
} catch (Exception ex) {
log.error("Error trying to treat PL.facility '" + facility + "' as a location.name", ex);
return null;
}
}
use of ca.uhn.hl7v2.model.v25.datatype.PL in project openmrs-core by openmrs.
the class HL7ServiceTest method resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect.
/**
* @throws HL7Exception
* @see HL7Service#resolveLocationId(ca.uhn.hl7v2.model.v25.datatype.PL)
*/
@Test
public void resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect() throws HL7Exception {
executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
HL7Service hl7service = Context.getHL7Service();
Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "PV1||O|99999^0^0^0&Unknown&0||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
ORU_R01 oru = (ORU_R01) message;
PV1 pv1 = oru.getPATIENT_RESULT().getPATIENT().getVISIT().getPV1();
Assert.assertNotNull("PV1 parsed as null", pv1);
PL hl7Location = pv1.getAssignedPatientLocation();
Integer locationId = hl7service.resolveLocationId(hl7Location);
Assert.assertNull(locationId);
}
use of ca.uhn.hl7v2.model.v25.datatype.PL in project openmrs-core by openmrs.
the class HL7ServiceTest method resolveLocationId_shouldReturnInternalIdentifierOfLocationIfOnlyLocationNameIsSpecified.
/**
* @throws HL7Exception
* @see HL7Service#resolveLocationId(ca.uhn.hl7v2.model.v25.datatype.PL)
*/
@Test
public void resolveLocationId_shouldReturnInternalIdentifierOfLocationIfOnlyLocationNameIsSpecified() throws HL7Exception {
executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
HL7Service hl7service = Context.getHL7Service();
Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "PV1||O|99999^0^0^0&Test Location&0||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
ORU_R01 oru = (ORU_R01) message;
PV1 pv1 = oru.getPATIENT_RESULT().getPATIENT().getVISIT().getPV1();
Assert.assertNotNull("PV1 parsed as null", pv1);
PL hl7Location = pv1.getAssignedPatientLocation();
Integer locationId = hl7service.resolveLocationId(hl7Location);
Assert.assertEquals("Resolved and given locationId shoud be equals", Integer.valueOf(1), locationId);
}
use of ca.uhn.hl7v2.model.v25.datatype.PL in project openmrs-core by openmrs.
the class ORUR01Handler method getLocation.
private Location getLocation(PV1 pv1) throws HL7Exception {
PL hl7Location = pv1.getAssignedPatientLocation();
Integer locationId = Context.getHL7Service().resolveLocationId(hl7Location);
if (locationId == null) {
throw new HL7Exception(Context.getMessageSourceService().getMessage("ORUR01.error.UnresolvedLocation"));
}
return Context.getLocationService().getLocation(locationId);
}
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