Examples with PV1 ca.uhn.hl7v2.model.v26.segment.PV1 used on opensource projects

Example 1 with PV1

use of ca.uhn.hl7v2.model.v26.segment.PV1 in project streamsx.health by IBMStreams.

the class AdtToModelMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<ADTEvent> adtEvents = new ArrayList<ADTEvent>();
    if (message instanceof ADT_AXX) {
        ADT_AXX superMsg = (ADT_AXX) message;
        MessageInfo msg = new MessageInfo();
        Patient patient = new Patient();
        try {
            MSH header = superMsg.getMSH();
            msg.setSendingApp(header.getSendingApplication().encode());
            msg.setSendingFacility(header.getSendingFacility().encode());
            msg.setReceivingApp(header.getReceivingApplication().encode());
            msg.setReceivingFacility(header.getReceivingFacility().encode());
            msg.setMessageTs(header.getDateTimeOfMessage().encode());
            msg.setMessageType(header.getMessageType().encode());
            PID pid = superMsg.getPID();
            patient.setId(pid.getPatientID().encode());
            XPN[] patientNames = pid.getPatientName();
            for (XPN name : patientNames) {
                if (patient.getName().equals(IInjestServicesConstants.EMPTYSTR)) {
                    patient.setName(getPatientFullName(name));
                } else {
                    patient.addAlternateName(getPatientFullName(name));
                }
            }
            patient.setGender(pid.getAdministrativeSex().encode());
            patient.setDateOfBirth(pid.getDateTimeOfBirth().encode());
            CX[] ids = pid.getAlternatePatientIDPID();
            if (ids.length > 0) {
                for (CX cx : ids) {
                    patient.addAlternativeId(cx.encode());
                }
            }
            EventDetails evt = new EventDetails();
            EVN evn = superMsg.getEVN();
            evt.setEventType(evn.getEventTypeCode().encode());
            evt.setEventTs(evn.getEvn6_EventOccurred().encode());
            evt.setRecordTs(evn.getEvn2_RecordedDateTime().encode());
            PV1 pv1 = superMsg.getPV1();
            PatientVisit patientVisit = new PatientVisit();
            patientVisit.setPatientClass(pv1.getPatientClass().encode());
            patientVisit.setLocation(pv1.getAssignedPatientLocation().encode());
            patientVisit.setPriorLocation(pv1.getPriorPatientLocation().encode());
            patientVisit.setVisitNumber(pv1.getVisitNumber().encode());
            patient.setStatus(pv1.getBedStatus().encode());
            XCN[] doctors = pv1.getAttendingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addAttendingDoctor(clinician);
            }
            doctors = pv1.getConsultingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addConsultingDoctor(clinician);
            }
            ADTEvent adtEvent = new ADTEvent();
            adtEvent.setEvt(evt);
            adtEvent.setPatient(patient);
            adtEvent.setMsg(msg);
            adtEvent.setPv(patientVisit);
            adtEvents.add(adtEvent);
        } catch (HL7Exception e) {
            TRACE.error("Unable to parse HL7 message", e);
        }
    }
    return (Iterable<T>) adtEvents;
}

Example 2 with PV1

use of ca.uhn.hl7v2.model.v26.segment.PV1 in project streamsx.health by IBMStreams.

the class ObxToSplMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<Observation> observations = new ArrayList<Observation>();
    if (message instanceof ORU_R01) {
        ORU_R01 oruMsg = (ORU_R01) message;
        String obxTs = "";
        String obxLocation = "";
        String sendingApp = "";
        String sendingFacility = "";
        try {
            MSH msh = oruMsg.getMSH();
            sendingApp = msh.getSendingApplication().encode();
            sendingFacility = msh.getSendingFacility().encode();
            List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
            for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
                ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
                OBR obr = order_OBSERVATION.getOBR();
                DTM ts = obr.getObservationDateTime();
                obxTs = ts.getValue();
                ORU_R01_PATIENT patient = result.getPATIENT();
                ORU_R01_VISIT visit = patient.getVISIT();
                PL location = visit.getPV1().getAssignedPatientLocation();
                obxLocation = location.encode();
                List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
                for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
                    parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
                }
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
        try {
            OBR obr = (OBR) oruMsg.get("OBR");
            DTM ts = obr.getObservationDateTime();
            obxTs = ts.getValue();
            Structure tmp = oruMsg.get("PV1");
            if (tmp != null) {
                PV1 pv1 = (PV1) tmp;
                PL location = pv1.getAssignedPatientLocation();
                obxLocation = location.encode();
            }
            Structure[] structures = oruMsg.getAll("OBX");
            for (Structure structure : structures) {
                parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
    }
    return (Iterable<T>) observations;
}

Example 3 with PV1

use of ca.uhn.hl7v2.model.v26.segment.PV1 in project openmrs-core by openmrs.

the class ORUR01Handler method createEncounter.

/**
 * This method does not call the database to create the encounter row. The encounter is only
 * created after all obs have been attached to it Creates an encounter pojo to be attached
 * later. This method does not create an encounterId
 *
 * @param msh
 * @param patient
 * @param pv1
 * @param orc
 * @return
 * @throws HL7Exception
 */
private Encounter createEncounter(MSH msh, Patient patient, PV1 pv1, ORC orc) throws HL7Exception {
    // the encounter we will return
    Encounter encounter;
    // look for the encounter id in PV1-19
    CX visitNumber = pv1.getVisitNumber();
    Integer encounterId = null;
    try {
        encounterId = Integer.valueOf(visitNumber.getIDNumber().getValue());
    } catch (NumberFormatException e) {
    // pass
    }
    // the database
    if (encounterId != null) {
        encounter = Context.getEncounterService().getEncounter(encounterId);
    } else {
        // if no encounter_id was passed in, this is a new
        // encounter, create the object
        encounter = new Encounter();
        Date encounterDate = getEncounterDate(pv1);
        Provider provider = getProvider(pv1);
        Location location = getLocation(pv1);
        Form form = getForm(msh);
        EncounterType encounterType = getEncounterType(msh, form);
        User enterer = getEnterer(orc);
        // Date dateEntered = getDateEntered(orc); // ignore this since we have no place in the data model to store it
        encounter.setEncounterDatetime(encounterDate);
        if (unknownRole == null) {
            unknownRole = Context.getEncounterService().getEncounterRoleByUuid(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID);
        }
        encounter.setProvider(unknownRole, provider);
        encounter.setPatient(patient);
        encounter.setLocation(location);
        encounter.setForm(form);
        encounter.setEncounterType(encounterType);
        encounter.setCreator(enterer);
        encounter.setDateCreated(new Date());
    }
    return encounter;
}

Example 4 with PV1

use of ca.uhn.hl7v2.model.v26.segment.PV1 in project openmrs-core by openmrs.

the class ORUR01Handler method getProvider.

private Provider getProvider(PV1 pv1) throws HL7Exception {
    XCN hl7Provider = pv1.getAttendingDoctor(0);
    Provider provider = null;
    String id = hl7Provider.getIDNumber().getValue();
    String assignAuth = hl7Provider.getAssigningAuthority().getUniversalID().getValue();
    String type = hl7Provider.getAssigningAuthority().getUniversalIDType().getValue();
    String errorMessage;
    if (StringUtils.hasText(id)) {
        String specificErrorMsg = "";
        if (OpenmrsUtil.nullSafeEquals("L", type)) {
            if (HL7Constants.PROVIDER_ASSIGNING_AUTH_PROV_ID.equalsIgnoreCase(assignAuth)) {
                try {
                    provider = Context.getProviderService().getProvider(Integer.valueOf(id));
                } catch (NumberFormatException e) {
                // ignore
                }
                specificErrorMsg = "with provider Id";
            } else if (HL7Constants.PROVIDER_ASSIGNING_AUTH_IDENTIFIER.equalsIgnoreCase(assignAuth)) {
                provider = Context.getProviderService().getProviderByIdentifier(id);
                specificErrorMsg = "with provider identifier";
            } else if (HL7Constants.PROVIDER_ASSIGNING_AUTH_PROV_UUID.equalsIgnoreCase(assignAuth)) {
                provider = Context.getProviderService().getProviderByUuid(id);
                specificErrorMsg = "with provider uuid";
            }
        } else {
            try {
                Person person = Context.getPersonService().getPerson(Integer.valueOf(id));
                Collection<Provider> providers = Context.getProviderService().getProvidersByPerson(person);
                if (!providers.isEmpty()) {
                    provider = providers.iterator().next();
                }
            } catch (NumberFormatException e) {
            // ignore
            }
            specificErrorMsg = "associated to a person with person id";
        }
        errorMessage = "Could not resolve provider " + specificErrorMsg + ":" + id;
    } else {
        errorMessage = "No unique identifier was found for the provider";
    }
    if (provider == null) {
        throw new HL7Exception(errorMessage);
    }
    return provider;
}

Example 5 with PV1

use of ca.uhn.hl7v2.model.v26.segment.PV1 in project openmrs-core by openmrs.

the class HL7ServiceTest method resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect.

/**
 * @throws HL7Exception
 * @see HL7Service#resolveLocationId(ca.uhn.hl7v2.model.v25.datatype.PL)
 */
@Test
public void resolveLocationId_shouldReturnNullIfLocationIdAndNameAreIncorrect() throws HL7Exception {
    executeDataSet("org/openmrs/hl7/include/ORUTest-initialData.xml");
    HL7Service hl7service = Context.getHL7Service();
    Message message = hl7service.parseHL7String("MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||3^^^^||John3^Doe^||\r" + "NK1|1|Hornblower^Horatio^L|2B^Sibling^99REL||||||||||||M|19410501|||||||||||||||||1000^^^L^PN||||\r" + "PV1||O|99999^0^0^0&Unknown&0||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|5497^CD4, BY FACS^99DCT||450|||||||||20080206\r" + "OBX|2|DT|5096^RETURN VISIT DATE^99DCT||20080229|||||||||20080212");
    ORU_R01 oru = (ORU_R01) message;
    PV1 pv1 = oru.getPATIENT_RESULT().getPATIENT().getVISIT().getPV1();
    Assert.assertNotNull("PV1 parsed as null", pv1);
    PL hl7Location = pv1.getAssignedPatientLocation();
    Integer locationId = hl7service.resolveLocationId(hl7Location);
    Assert.assertNull(locationId);
}