Examples with Structure ca.uhn.hl7v2.model.Structure used on opensource projects

Example 1 with Structure

use of ca.uhn.hl7v2.model.Structure in project tdi-studio-se by Talend.

the class HL7MessageTreeLabelProvider method getColumnText.

public String getColumnText(Object element, int columnIndex) {
    if (element instanceof Type) {
        Type datatype = (Type) element;
        return datatype.getName();
    }
    if (element instanceof IModel) {
        if (element instanceof TypeModel) {
            TypeModel tm = (TypeModel) element;
            allPrimitives.addAll(Arrays.asList(tm.getPrimitives()));
        }
        return ((IModel) element).getDisplayName();
    }
    // }
    if (element instanceof Group) {
        Group group = (Group) element;
        String groupName = group.getName();
        groupName = groupName.substring(groupName.lastIndexOf('.') + 1, groupName.length());
        return groupName;
    }
    if (element instanceof Structure) {
        Structure structure = (Structure) element;
        return structure.getName();
    }
    return null;
}

Example 2 with Structure

use of ca.uhn.hl7v2.model.Structure in project tdi-studio-se by Talend.

the class HL7PublicUtil method getFirstLevelChild.

public List getFirstLevelChild(Object parentElement) {
    List values = new ArrayList();
    if (parentElement instanceof Message) {
        Message messParent = (Message) parentElement;
        String[] childNames = messParent.getNames();
        if (!values.isEmpty()) {
            values.clear();
        }
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = messParent.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Message) {
                        values.add(childReps[j]);
                    }
                    if (childReps[j] instanceof Group) {
                        values.add(childReps[j]);
                        allSegmentFromGroup.clear();
                        getAllSegmentsFromGroup((Group) childReps[j]);
                    }
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sModel = new SegmentModel((Segment) childReps[j], messParent, i, j);
                        if (sModel.getTypes() != null && sModel.getTypes().length > 0) {
                            values.add(sModel);
                            if (!allSegmentsForMessage.contains(sModel)) {
                                allSegmentsForMessage.add(sModel);
                            }
                        }
                    }
                }
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
    }
    return values;
}

Example 3 with Structure

use of ca.uhn.hl7v2.model.Structure in project tdi-studio-se by Talend.

the class HL7PublicUtil method getChildren.

public Set getChildren(Object parentElement) {
    // List values = new ArrayList();
    Set values = new HashSet();
    if (parentElement instanceof Message) {
        Message messParent = (Message) parentElement;
        String[] childNames = messParent.getNames();
        if (!values.isEmpty()) {
            values.clear();
        }
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = messParent.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Message) {
                        values.add(childReps[j]);
                        if (getChildren(childReps[j]).size() > 0) {
                            values.addAll(getChildren(childReps[j]));
                        }
                    }
                    if (childReps[j] instanceof Group) {
                        values.add(childReps[j]);
                        allSegmentFromGroup.clear();
                        getAllSegmentsFromGroup((Group) childReps[j]);
                    }
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sModel = new SegmentModel((Segment) childReps[j], messParent, i, j);
                        if (sModel.getTypes() != null && sModel.getTypes().length > 0) {
                            values.add(sModel);
                            if (getChildren(sModel).size() > 0) {
                                values.addAll(getChildren(sModel));
                            }
                            if (!allSegmentsForMessage.contains(sModel)) {
                                allSegmentsForMessage.add(sModel);
                            }
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values;
    }
    if (parentElement instanceof Segment) {
        values.clear();
        Segment segment = (Segment) parentElement;
        SegmentModel sm = new SegmentModel(segment, segment, 0, 0);
        TypeModel[] models = sm.getTypes();
        for (TypeModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    }
    if (parentElement instanceof SegmentModel) {
        SegmentModel sm = (SegmentModel) parentElement;
        TypeModel[] models = sm.getTypes();
        for (TypeModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    }
    if (parentElement instanceof TypeModel) {
        TypeModel tm = (TypeModel) parentElement;
        PrimitiveModel[] models = tm.getPrimitives();
        for (PrimitiveModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    // return tm.getPrimitives();
    }
    if (parentElement instanceof Group) {
        values.clear();
        Group group = (Group) parentElement;
        String[] childNames = group.getNames();
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = group.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sm = new SegmentModel((Segment) childReps[j], group, i, j);
                        if (sm.getTypes() != null && sm.getTypes().length > 0) {
                            values.add(sm);
                            if (getChildren(sm).size() > 0) {
                                values.addAll(getChildren(sm));
                            }
                        }
                    } else {
                        values.add(childReps[j]);
                        if (getChildren(childReps[j]).size() > 0) {
                            values.addAll(getChildren(childReps[j]));
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values;
    }
    return values;
}

Example 4 with Structure

use of ca.uhn.hl7v2.model.Structure in project nifi by apache.

the class HapiMessage method populateSegments.

private void populateSegments(final Group group, final List<HL7Segment> segments) throws HL7Exception {
    for (final String structureName : group.getNames()) {
        final Structure[] structures = group.getAll(structureName);
        if (group.isGroup(structureName)) {
            for (final Structure structure : structures) {
                populateSegments((Group) structure, segments);
            }
        } else {
            for (final Structure structure : structures) {
                final Segment segment = (Segment) structure;
                final HapiSegment hapiSegment = new HapiSegment(segment);
                segments.add(hapiSegment);
            }
        }
    }
}

Example 5 with Structure

use of ca.uhn.hl7v2.model.Structure in project streamsx.health by IBMStreams.

the class ObxToSplMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<Observation> observations = new ArrayList<Observation>();
    if (message instanceof ORU_R01) {
        ORU_R01 oruMsg = (ORU_R01) message;
        String obxTs = "";
        String obxLocation = "";
        String sendingApp = "";
        String sendingFacility = "";
        try {
            MSH msh = oruMsg.getMSH();
            sendingApp = msh.getSendingApplication().encode();
            sendingFacility = msh.getSendingFacility().encode();
            List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
            for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
                ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
                OBR obr = order_OBSERVATION.getOBR();
                DTM ts = obr.getObservationDateTime();
                obxTs = ts.getValue();
                ORU_R01_PATIENT patient = result.getPATIENT();
                ORU_R01_VISIT visit = patient.getVISIT();
                PL location = visit.getPV1().getAssignedPatientLocation();
                obxLocation = location.encode();
                List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
                for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
                    parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
                }
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
        try {
            OBR obr = (OBR) oruMsg.get("OBR");
            DTM ts = obr.getObservationDateTime();
            obxTs = ts.getValue();
            Structure tmp = oruMsg.get("PV1");
            if (tmp != null) {
                PV1 pv1 = (PV1) tmp;
                PL location = pv1.getAssignedPatientLocation();
                obxLocation = location.encode();
            }
            Structure[] structures = oruMsg.getAll("OBX");
            for (Structure structure : structures) {
                parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
    }
    return (Iterable<T>) observations;
}