use of ca.uhn.hl7v2.model.v26.datatype.XPN in project streamsx.health by IBMStreams.
the class AdtToModelMapper method messageToModel.
@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
ArrayList<ADTEvent> adtEvents = new ArrayList<ADTEvent>();
if (message instanceof ADT_AXX) {
ADT_AXX superMsg = (ADT_AXX) message;
MessageInfo msg = new MessageInfo();
Patient patient = new Patient();
try {
MSH header = superMsg.getMSH();
msg.setSendingApp(header.getSendingApplication().encode());
msg.setSendingFacility(header.getSendingFacility().encode());
msg.setReceivingApp(header.getReceivingApplication().encode());
msg.setReceivingFacility(header.getReceivingFacility().encode());
msg.setMessageTs(header.getDateTimeOfMessage().encode());
msg.setMessageType(header.getMessageType().encode());
PID pid = superMsg.getPID();
patient.setId(pid.getPatientID().encode());
XPN[] patientNames = pid.getPatientName();
for (XPN name : patientNames) {
if (patient.getName().equals(IInjestServicesConstants.EMPTYSTR)) {
patient.setName(getPatientFullName(name));
} else {
patient.addAlternateName(getPatientFullName(name));
}
}
patient.setGender(pid.getAdministrativeSex().encode());
patient.setDateOfBirth(pid.getDateTimeOfBirth().encode());
CX[] ids = pid.getAlternatePatientIDPID();
if (ids.length > 0) {
for (CX cx : ids) {
patient.addAlternativeId(cx.encode());
}
}
EventDetails evt = new EventDetails();
EVN evn = superMsg.getEVN();
evt.setEventType(evn.getEventTypeCode().encode());
evt.setEventTs(evn.getEvn6_EventOccurred().encode());
evt.setRecordTs(evn.getEvn2_RecordedDateTime().encode());
PV1 pv1 = superMsg.getPV1();
PatientVisit patientVisit = new PatientVisit();
patientVisit.setPatientClass(pv1.getPatientClass().encode());
patientVisit.setLocation(pv1.getAssignedPatientLocation().encode());
patientVisit.setPriorLocation(pv1.getPriorPatientLocation().encode());
patientVisit.setVisitNumber(pv1.getVisitNumber().encode());
patient.setStatus(pv1.getBedStatus().encode());
XCN[] doctors = pv1.getAttendingDoctor();
for (XCN xcn : doctors) {
String id = xcn.getIDNumber().encode();
String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
Clinician clinician = new Clinician();
clinician.setId(id);
clinician.setName(name);
patientVisit.addAttendingDoctor(clinician);
}
doctors = pv1.getConsultingDoctor();
for (XCN xcn : doctors) {
String id = xcn.getIDNumber().encode();
String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
Clinician clinician = new Clinician();
clinician.setId(id);
clinician.setName(name);
patientVisit.addConsultingDoctor(clinician);
}
ADTEvent adtEvent = new ADTEvent();
adtEvent.setEvt(evt);
adtEvent.setPatient(patient);
adtEvent.setMsg(msg);
adtEvent.setPv(patientVisit);
adtEvents.add(adtEvent);
} catch (HL7Exception e) {
TRACE.error("Unable to parse HL7 message", e);
}
}
return (Iterable<T>) adtEvents;
}
use of ca.uhn.hl7v2.model.v26.datatype.XPN in project openmrs-core by openmrs.
the class HL7ServiceImpl method createPersonFromNK1.
/**
* @see org.openmrs.hl7.HL7Service#createPersonFromNK1(ca.uhn.hl7v2.model.v25.segment.NK1)
*/
@Override
public Person createPersonFromNK1(NK1 nk1) throws HL7Exception {
// NOTE: following block (with minor modifications) stolen from
// ADTA28Handler
// TODO: generalize this for use with both PID and NK1 segments
Person person = new Person();
// UUID
CX[] identifiers = nk1.getNextOfKinAssociatedPartySIdentifiers();
String uuid = getUuidFromIdentifiers(identifiers);
if (Context.getPersonService().getPersonByUuid(uuid) != null) {
throw new HL7Exception("Non-unique UUID '" + uuid + "' for new person");
}
person.setUuid(uuid);
// Patient Identifiers
List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
for (CX id : identifiers) {
String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
String hl7PatientId = id.getIDNumber().getValue();
log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
if (assigningAuthority != null && assigningAuthority.length() > 0) {
try {
PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
if (pit == null) {
if (!"UUID".equals(assigningAuthority)) {
log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
}
// skip identifiers with unknown type
continue;
}
PatientIdentifier pi = new PatientIdentifier();
pi.setIdentifierType(pit);
pi.setIdentifier(hl7PatientId);
// Get default location
Location location = Context.getLocationService().getDefaultLocation();
if (location == null) {
throw new HL7Exception("Cannot find default location");
}
pi.setLocation(location);
try {
PatientIdentifierValidator.validateIdentifier(pi);
goodIdentifiers.add(pi);
} catch (PatientIdentifierException ex) {
log.warn("Patient identifier in NK1 is invalid: " + pi, ex);
}
} catch (Exception e) {
log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
}
} else {
log.debug("NK1 contains identifier with no assigning authority");
continue;
}
}
if (!goodIdentifiers.isEmpty()) {
// If we have one identifier, set it as the preferred to make the validator happy.
if (goodIdentifiers.size() == 1) {
goodIdentifiers.get(0).setPreferred(true);
}
// cast the person as a Patient and add identifiers
person = new Patient(person);
((Patient) person).addIdentifiers(goodIdentifiers);
}
// Person names
for (XPN patientNameX : nk1.getNKName()) {
PersonName name = new PersonName();
name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
name.setGivenName(patientNameX.getGivenName().getValue());
name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
person.addName(name);
}
// Gender (checks for null, but not for 'M' or 'F')
String gender = nk1.getAdministrativeSex().getValue();
if (gender == null) {
throw new HL7Exception("Missing gender in an NK1 segment");
}
gender = gender.toUpperCase();
if (!OpenmrsConstants.GENDER().containsKey(gender)) {
throw new HL7Exception("Unrecognized gender: " + gender);
}
person.setGender(gender);
// Date of Birth
TS dateOfBirth = nk1.getDateTimeOfBirth();
if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
throw new HL7Exception("Missing birth date in an NK1 segment");
}
person.setBirthdate(HL7Util.parseHL7Timestamp(dateOfBirth.getTime().getValue()));
// Estimated birthdate?
ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
if (precisionTemp != null && precisionTemp.getValue() != null) {
String precision = precisionTemp.getValue().toUpperCase();
log.debug("The birthdate is estimated: " + precision);
if ("Y".equals(precision) || "L".equals(precision)) {
person.setBirthdateEstimated(true);
}
}
// save the new person or patient
if (person instanceof Patient) {
Context.getPatientService().savePatient((Patient) person);
} else {
Context.getPersonService().savePerson(person);
}
return person;
}
use of ca.uhn.hl7v2.model.v26.datatype.XPN in project openmrs-core by openmrs.
the class ADTA28Handler method createPatient.
// Create a new patient when this patient doesn't exist in the database
private Patient createPatient(PID pid, String creatorName) throws HL7Exception {
Patient patient = new Patient();
// Try to use the specified username as the creator
User creator = Context.getUserService().getUserByUsername(creatorName);
if (creator != null) {
patient.setCreator(creator);
}
// Create all patient identifiers specified in the message
// Copied code from resolvePatientId() in HL7ServiceImpl.java
CX[] idList = pid.getPatientIdentifierList();
if (idList == null || idList.length < 1) {
throw new HL7Exception("Missing patient identifier in PID segment");
}
List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
for (CX id : idList) {
String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
String hl7PatientId = id.getIDNumber().getValue();
log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
if (assigningAuthority != null && assigningAuthority.length() > 0) {
try {
PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
if (pit == null) {
log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
// skip identifiers with unknown type
continue;
}
PatientIdentifier pi = new PatientIdentifier();
if (creator != null) {
pi.setCreator(creator);
}
pi.setIdentifierType(pit);
pi.setIdentifier(hl7PatientId);
// Get default location
Location location = Context.getLocationService().getDefaultLocation();
if (location == null) {
throw new HL7Exception("Cannot find default location");
}
pi.setLocation(location);
try {
PatientIdentifierValidator.validateIdentifier(pi);
goodIdentifiers.add(pi);
} catch (PatientIdentifierException ex) {
log.warn("Patient identifier in PID is invalid: " + pi, ex);
}
} catch (Exception e) {
log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
}
} else {
log.error("PID contains identifier with no assigning authority");
continue;
}
}
if (goodIdentifiers.isEmpty()) {
throw new HL7Exception("PID segment has no recognizable patient identifiers.");
}
patient.addIdentifiers(goodIdentifiers);
// Extract patient name from the message
XPN patientNameX = pid.getPatientName(0);
if (patientNameX == null) {
throw new HL7Exception("Missing patient name in the PID segment");
}
// Patient name
PersonName name = new PersonName();
name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
name.setGivenName(patientNameX.getGivenName().getValue());
name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
if (creator != null) {
name.setCreator(creator);
}
patient.addName(name);
// Gender (checks for null, but not for 'M' or 'F')
String gender = pid.getAdministrativeSex().getValue();
if (gender == null) {
throw new HL7Exception("Missing gender in the PID segment");
}
gender = gender.toUpperCase();
if (!OpenmrsConstants.GENDER().containsKey(gender)) {
throw new HL7Exception("Unrecognized gender: " + gender);
}
patient.setGender(gender);
// Date of Birth
TS dateOfBirth = pid.getDateTimeOfBirth();
if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
throw new HL7Exception("Missing birth date in the PID segment");
}
patient.setBirthdate(tsToDate(dateOfBirth));
// Estimated birthdate?
ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
if (precisionTemp != null && precisionTemp.getValue() != null) {
String precision = precisionTemp.getValue().toUpperCase();
log.debug("The birthdate is estimated: " + precision);
if ("Y".equals(precision) || "L".equals(precision)) {
patient.setBirthdateEstimated(true);
}
}
return patient;
}
Aggregations